Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22372g00001 ATGTCAAATGGAGACTTAGGCAGGTGGCTACACGAACTACCAACGGGTGAAACCAACGTGGAGGATTGGAGTAGCGACACGTGGGAAATTCAAAACGGTGTCGGTTCACAAACCCCCTCACCAGAAAAAATGGGTTGGCCAACACGACACCGTATCGCTATAGGAGTAGCGCGTGGTCTTGCTTTTCTCCACCATGCAGGTTCAAAGCCCGTCGTTCACGGCCATTTGGTAACATCAAATGTCCTACTCGCTGATGATTTCGAGCCTCGAATTGCTGATTTTGGGTTTCGAAAATTCGGGCAACAATGTCCTCCGAATTGTAGCACCGAAACAGATGTTTATTGCTTTGGTGC 353 0.4873 MSNGDLGRWLHELPTGETNVEDWSSDTWEIQNGVGSQTPSPEKMGWPTRHRIAIGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGA 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22372g00001 118 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 109 - -
Trme22372g00001 118 Pfam Protein tyrosine and serine/threonine kinase 1 98 IPR001245 GO:0004672|GO:0006468
Trme22372g00001 118 SUPERFAMILY Protein kinase-like (PK-like) 1 117 IPR011009 -
Trme22372g00001 118 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Trme22372g00001 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22372g00001 Trme-Chr22372 1 353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22372g00001 36 117 Receptor kinase-like Gene Family AT5G07280 37.864 1.11e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trme22372g00001 PK_Tyr_Ser-Thr 3.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22372g00001 - - gmx:100778920 207.994