Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22355g00001 ATGATGATGATATTAACTTCATCAACAACTCACAATCACAAACGAAAGAATTATTATCANNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTAACAAAAGGCCTTTTAGAGGAGTAAGAACAAGGCCATGGGGGAAATTCGCGGCGGAGATAAGAGACTCAACAAGAAAAGGGGCTAGAGTATGGCTTGGAACATTCCACACGGCCGAAGCAGCTGCTTTAGCTTACGATCAAGCTGCTTTTTTAACAAGAGGTTCATCGGCAGTGTTGAATTTTCCAGAGGCAATAGTTAAAGCATCACTCAAAGAAATGGCTAAAAATTCTAAGCCTTTGGAAGAAGGTACTTCCCCAGTGNNNNTNNNNNNNNNNAAACACACCATGAGGAAAAGATCCAATAAGGTTATTAAAAAGAAGATCAAAAGTGATTATCATAGTGATCAAATTCAGACTCAGATAAAGGACAATACTGATTCTGAAAATGTGTTGGTGCTTGAGGATTTGGGCACTGAATATTTGGAGCAACTATTGAGTGTGACCTCATAA 582 0.3299 MMMILTSSTTHNHKRKNYYXXXXXXXXXXXXXXXXXXXXXXXXXNKRPFRGVRTRPWGKFAAEIRDSTRKGARVWLGTFHTAEAAALAYDQAAFLTRGSSAVLNFPEAIVKASLKEMAKNSKPLEEGTSPVXXXXXKHTMRKRSNKVIKKKIKSDYHSDQIQTQIKDNTDSENVLVLEDLGTEYLEQLLSVTS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22355g00001 193 FunFam Ethylene-responsive transcription factor 2 47 107 - -
Trme22355g00001 193 PANTHER DNA-BINDING DOMAIN 43 189 IPR044808 GO:0003700|GO:0009873
Trme22355g00001 193 SMART rav1_2 48 112 IPR001471 GO:0003700|GO:0006355
Trme22355g00001 193 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trme22355g00001 193 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trme22355g00001 193 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Trme22355g00001 193 ProSiteProfiles AP2/ERF domain profile. 48 106 IPR001471 GO:0003700|GO:0006355
Trme22355g00001 193 Coils Coil 45 47 - -
Trme22355g00001 193 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Trme22355g00001 193 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
Trme22355g00001 193 Pfam AP2 domain 49 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22355g00001 Trme-Chr22355 534 1115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22355g00001 45 189 AP2-EREBP Transcription Factor Family AT3G23240 53.103 1.74e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme22355g00001 AP2 9.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22355g00001 K14516 - gmx:100780775 171.014