Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22353g00001 ATGTGGACCAAGGAGGAGACAAATGAACTATTCGACTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTAATAGCTGATAGATTCTCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGTGTTGCGGGCTATAGTACATGCTAGAGCTGCATCTTCTGGAGATGTTGCAACACATCCTCTCATTAAGGAGCCATATAATGTTTCACAAGAAATTGAGCGAAAACGGGCACTATCCATGGTCCTCTCACAAACAAGACAACACGAGAAAAGAGATGAAGAGGTTCTTTAA 300 0.4167 MWTKEETNELFDLCERFDLRFVVIADRFSSSRTVEELKDRYYSVLRAIVHARAASSGDVATHPLIKEPYNVSQEIERKRALSMVLSQTRQHEKRDEEVL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22353g00001 99 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 99 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trme22353g00001 99 SUPERFAMILY Homeodomain-like 1 46 IPR009057 -
Trme22353g00001 99 Gene3D - 1 58 - -
Trme22353g00001 99 ProSiteProfiles Myb-like domain profile. 1 45 IPR001005 -
Trme22353g00001 99 SMART sant 2 47 IPR001005 -
Trme22353g00001 99 Pfam SANT/Myb-like domain of DAMP1 2 48 IPR032563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22353g00001 Trme-Chr22353 588 1187 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme22353g00001 SANT_DAMP1_like 4.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22353g00001 K11324 - gmx:100818926 167.162