Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22349g00001 TCTAATGTGAAGTTCATACAAGAGAAACGCTTGATAGGAAAATATTTTGAAGAGATAAGTCAAGAAACCGGGAAATATGTTTACGGAGTTGATGACACATTGAAGGCCCTAGAGATGGGTGCTGTTGAAACACTCATTGTATGGGAGAATTTGGATATTAATAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGAMCAAGAAGCTGATCAAAGCAACTTCCGYGATGCGGCTACCAATGCAGACTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCGAATGAGTACAAAAAGTTCGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAGTTTTGTAGGGGGTTTGGTGGTATTGGAGGCATGCTTCGCTACCAGCTTGATATCAGATCATTTGATGAATTATCTGATGATGATGGTGGAGTGTACGAGGATTCTGATTAA 489 0.407 SNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDINRYVLKNATTGEIVIKHLKKXQEADQSNFRDAATNADLEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGGVYEDSD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22349g00001 162 SUPERFAMILY L30e-like 2 144 IPR029064 -
Trme22349g00001 162 Pfam eRF1 domain 3 5 142 IPR005142 -
Trme22349g00001 162 Gene3D - 3 162 IPR029064 -
Trme22349g00001 162 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 153 IPR004403 GO:0003747|GO:0006415
Trme22349g00001 162 FunFam Peptide chain release factor subunit 1 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22349g00001 Trme-Chr22349 3 491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22349g00001 1 162 Eukaryotic Initiation Factors Gene Family AT3G26618 87.037 1.19e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22349g00001 K03265 - egr:104419069 299.671