Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22332g00001 AATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGTGCATGATGTTGAACTTTCTGAACATGAATCTTATGTAACATTAGAAGGTGGATTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAGATACTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTGTTATCATTTCTGGCTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGGCAGTGGAAAAGGGAAGCTAAAAAGTGGTATCCTAAATTCCATGTAGAACTTTTACATGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAGAAGCGTACCGTCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGAACAGTTGCTTCACATTGATTGGGGCTATGCTGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCAGAAGTTACATTAGCTTGCAAACAGCTACAAACTATACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGCGGATATTCAAATGCTTCTCCATTACAA 849 0.3969 NANGCLDTSSCESLEVHDVELSEHESYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQDTGGIIGDEMGLGKTIQVLSFLAALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSDNDYERSVPSKNTRKWETLINRVMRSESGLLITTYEQLRILGEQLLHIDWGYAVLDEGHKIRNPNAEVTLACKQLQTIHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22332g00001 283 Gene3D - 34 273 IPR038718 -
Trme22332g00001 283 PANTHER SNF2/RAD54 FAMILY MEMBER 27 283 - -
Trme22332g00001 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 280 IPR027417 -
Trme22332g00001 283 Pfam SNF2-related domain 47 278 IPR000330 GO:0005524|GO:0140658
Trme22332g00001 283 MobiDBLite consensus disorder prediction 133 159 - -
Trme22332g00001 283 CDD DEXHc_ERCC6 44 254 - -
Trme22332g00001 283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 255 IPR014001 -
Trme22332g00001 283 SMART ultradead3 40 263 IPR014001 -
Trme22332g00001 283 FunFam Protein CHROMATIN REMODELING 8 22 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22332g00001 Trme-Chr22332 389 1237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22332g00001 32 271 RAD5 or RAD16-like Gene Family AT3G16600 26.641 1.08e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme22332g00001 SNF2_N 5.2e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22332g00001 K10841 - gmx:100820025 501.901