Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22330g00001 ACTCCGTGGACTGAAGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCTAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCCCCGCTCGATGAAGAATGTGAATCAATGGATTCCACAAACTCAAATGACGGAGAGTCTGCCTCTGCCCCATTAATGCCGGATAGCAACGCACAAGCGTCGTCTTACCCGCTAGTATATCCGGCATATTATTCTCCATTCTTCCCATTTCCTCTTCCCTATTGGTCTGGATACAGTCCAGAGCTGGCTCCTAAGAAGGAGACACACGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCGATCAATGTCGATGAACTTGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATTGGTGACGCCGGCCCCTCGACTTTGTCTCGTAAACTACTCGAAGAAGGACCTTCTAGACAGTCGGCATTTCATACAACTCCAGCTTGTGGGACTGTTCTTTGA 645 0.4698 TPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLMPDSNAQASSYPLVYPAYYSPFFPFPLPYWSGYSPELAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDAGPSTLSRKLLEEGPSRQSAFHTTPACGTVL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22330g00001 214 SMART sant 1 49 IPR001005 -
Trme22330g00001 214 SUPERFAMILY Homeodomain-like 2 52 IPR009057 -
Trme22330g00001 214 Pfam Myb-like DNA-binding domain 2 47 IPR001005 -
Trme22330g00001 214 ProSiteProfiles Myb-like domain profile. 1 47 IPR001005 -
Trme22330g00001 214 FunFam transcription factor MYB1R1 1 52 - -
Trme22330g00001 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 51 IPR017930 -
Trme22330g00001 214 MobiDBLite consensus disorder prediction 66 109 - -
Trme22330g00001 214 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 50 IPR006447 GO:0003677
Trme22330g00001 214 Gene3D - 1 53 - -
Trme22330g00001 214 CDD SANT 2 47 IPR001005 -
Trme22330g00001 214 ProSiteProfiles SANT domain profile. 1 51 IPR017884 -
Trme22330g00001 214 PANTHER TRANSCRIPTION FACTOR KUA1 1 161 - -
Trme22330g00001 214 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22330g00001 Trme-Chr22330 86 1140 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme22330g00001 Myb_DNA-binding 7.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22330g00001 - - gmx:778163 349.747