Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2232g00001 ATGGCTGGAATCGGAAAGACAACTCTTGCTACTGTCTTGTATGATAGAGTCTCCTATCAGTTTGATGCAAGTTGTTTTATTGAGAATGTAAGCAAAATTTATAAAGAAGGTGGTGCTACTGCTGTAAAGAAACAAATCCTTCGGCAAACCGTAGATGAAATAAATTTAGAGACATACAGCCCTTCTGAAATATCTCGAATTGTACGTAAAAGACTTCACAACAGAAAGTTTCTGGTAGTTCTTGACAATGCTAATCTATTAGAGCAAGTGGAAGACTTGGCTATAAGTCCTGAATTGCTTGGTAAAGGAAGTAGAATGATCATTACAACNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGTGTGTCGTTTGATGTGTATCAGGTTCCACTATTGAATAACAATGATGCTCGCGAACTTTTTTATAGAAAAGCTTTCAAAGGTAACGATCCCTCGAGCAGATGTGTGGAGCTGACTCCTGAAGTACTAAAATATACTCAAGGTCTTCCATTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAGTGCTAACGTGTGGAGAGATGCCTTGTATAGACTGAGGAATTATCCAGACAACAAAGTTATGGATGTGCTTGAGGTAAGTTTTGAGGGATTACATTATGAGGACAGGGAAATATTTGTGCATATTGCTTGTTTCTTTAATGGGGAGAAGGAAGATTATGTGAAGCGAATTCTAGATGCTTGTGGGTTGCACCCTTACATTGGAATTCAAAGTTTGATTGAGAGGTCATTCATAACTATTAGAAATCAGGAAATTTATATGCATGAAATGTTGCAAGAATTCGGGAAGAAAATGGTTAGGCAACAGTTTCCTTTCCAACCAGGGTCGTGGAGTAGAATATGGCTTTATGAAGATTTCTACTCTGGAACAGACAATGTCAAGGCCATMATTCTAGATCGAAAGGAGCATATCTCTGAATATCCTCAGTTGAAGGCTGAAGCATTGTCAATAATGAAGGGACTTAAAATTCTTATATTATATCAGAAGAATTTTTCAGGAAGTCTGAATTTTCTTTCTAACAGCTTGCAGTATCTTCTGTG 1115 0.3561 MAGIGKTTLATVLYDRVSYQFDASCFIENVSKIYKEGGATAVKKQILRQTVDEINLETYSPSEISRIVRKRLHNRKFLVVLDNANLLEQVEDLAISPELLGKGSRMIITTXXXXXXXXXXXXXXXXXXXCVSFDVYQVPLLNNNDARELFYRKAFKGNDPSSRCVELTPEVLKYTQGLPLAVRVVGSFLCTRSANVWRDALYRLRNYPDNKVMDVLEVSFEGLHYEDREIFVHIACFFNGEKEDYVKRILDACGLHPYIGIQSLIERSFITIRNQEIYMHEMLQEFGKKMVRQQFPFQPGSWSRIWLYEDFYSGTDNVKAIILDRKEHISEYPQLKAEALSIMKGLKILILYQKNFSGSLNFLSNSLQYLL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2232g00001 371 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 370 IPR044974 GO:0006952
Trme2232g00001 371 Gene3D - 1 117 IPR027417 -
Trme2232g00001 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 233 IPR027417 -
Trme2232g00001 371 SUPERFAMILY "Winged helix" DNA-binding domain 210 311 IPR036390 -
Trme2232g00001 371 Gene3D - 140 224 IPR042197 -
Trme2232g00001 371 PRINTS Disease resistance protein signature 71 85 - -
Trme2232g00001 371 PRINTS Disease resistance protein signature 175 189 - -
Trme2232g00001 371 Pfam NB-ARC domain 1 205 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2232g00001 Trme-Chr2232 29 1260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2232g00001 1 370 WRKY Transcription Factor Family AT5G45050 28.321 3.65e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2232g00001 - - vvo:131643801 535.028