Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22312g00001 ATGTCACACCAGCAGCAGACACTGGCACAGGTCTCGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTCTGTATCAGCATCCACCGACCACGCTGCTCTCTCCGAACAAAGACAACAGTCTTCTTCGTTGAATGTCGATAAACCTGCTGATGATGGTTACAATTGGAGGAAGTATGGACAGAAACACGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTATAAGTGCACACATCCTAGCTGTCCTGTCAAGAAAAAGGTTGAGCGCTCGCTTGCTGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAACGTCCGAGTAACAAGCGATCAAAAGATACTCTAACTTCAAATGACAGTTCAAATATGCAAGGGAATGCTGATTCGTCTTATCAAGGGATGATGGATCCAGAATCTAGTCAGGCAACAGGTGAACATGTATCCGGAACAAGTGATAGTGAGGAAATTGGTGATC 505 0.396 MSHQQQTLAQVSXXXXXXXXXXXXXXXXXXSVSASTDHAALSEQRQQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCPVKKKVERSLAGHVTAIIYKGEHNHQRPSNKRSKDTLTSNDSSNMQGNADSSYQGMMDPESSQATGEHVSGTSDSEEIGD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22312g00001 168 SMART WRKY_cls 57 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme22312g00001 168 Gene3D WRKY domain 42 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme22312g00001 168 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 149 IPR044810 GO:0003700
Trme22312g00001 168 FunFam WRKY transcription factor 44 117 - -
Trme22312g00001 168 MobiDBLite consensus disorder prediction 35 55 - -
Trme22312g00001 168 MobiDBLite consensus disorder prediction 29 65 - -
Trme22312g00001 168 ProSiteProfiles WRKY domain profile. 58 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme22312g00001 168 MobiDBLite consensus disorder prediction 107 168 - -
Trme22312g00001 168 Pfam WRKY DNA -binding domain 58 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme22312g00001 168 SUPERFAMILY WRKY DNA-binding domain 55 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme22312g00001 168 MobiDBLite consensus disorder prediction 123 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22312g00001 Trme-Chr22312 808 1312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22312g00001 36 168 WRKY Transcription Factor Family AT2G03340 56.618 2.78e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme22312g00001 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22312g00001 - - gmx:100127369 221.861