Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme222987g00001 CTTTCCTATCTGCACGATCAATGTGTACCACGTGTTCTTTATCGTGATGTCAAACCTAACAATATCTTGTTGGACGACAATTTCAACACTTATCTATCTAACTTTGGACTGGCGAAACTTCTCGGAACTTCAGATACACAAGCTACAACCGGTGTGGCAGGAACATTTGGGTACGTTGTTCCTGAATACGCCATGACATGTCGTGTTTCCGATAAAGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGTTGCTATCAGACAAAAAATTATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAATATAGTAGCATGA 324 0.4012 LSYLHDQCVPRVLYRDVKPNNILLDDNFNTYLSNFGLAKLLGTSDTQATTGVAGTFGYVVPEYAMTCRVSDKADVYSYGVVLLELLSDKKLLDPSFSSYGNGFNIVA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme222987g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme222987g00001 107 Pfam Protein kinase domain 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme222987g00001 107 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 92 - -
Trme222987g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 93 IPR011009 -
Trme222987g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Trme222987g00001 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme222987g00001 Trme-Chr222987 1 324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme222987g00001 1 106 Receptor kinase-like Gene Family AT3G02130 87.736 1.71e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trme222987g00001 Pkinase 6.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme222987g00001 - - jre:108988038 186.037