Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22247g00001 GAAGTAACATCTGTCTATGTGAGAAACCTGCCTGGTGATATTACCGAAGCGGAGATTGAGGAGGAGTTTAAGAGTTTCGGCAGAATTAAGCCAGATGGAATATTCGTAAGGGTCCGACAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTCGAAGACGTTGTTGGCGTTCAAAATGCACTTCAGGTTTGA 192 0.4323 EVTSVYVRNLPGDITEAEIEEEFKSFGRIKPDGIFVRVRQEIGVCYAFVEFEDVVGVQNALQV 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22247g00001 63 CDD RRM_SF 5 62 - -
Trme22247g00001 63 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 62 IPR000504 GO:0003723
Trme22247g00001 63 SUPERFAMILY RNA-binding domain, RBD 2 62 IPR035979 GO:0003676
Trme22247g00001 63 Gene3D - 1 63 IPR012677 -
Trme22247g00001 63 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 63 IPR000504 GO:0003723
Trme22247g00001 63 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 2 62 IPR039539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22247g00001 Trme-Chr22247 308 587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22247g00001 3 62 Eukaryotic Initiation Factors Gene Family AT1G22760 35.000 3.27e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22247g00001 - - cam:101501784 119.783