Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22243g00001 GTGGCATCTGTCCATCCATCTCTTTTCCTCCAATGCAAACTCTTGGAAGAAGAAGAATCTGTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATGGCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGTGATGCTTATAATGAGAAAGTTCTTGTGTTCAGCCAATTCCTCGATACTTTAAGCTTAATTGAAGACCAATTAAACTCGGTTTTCAAATGGACCAAGGGAAAGGAAATTCTGTACTTGGATGGAAATGTTGATCCAAATGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAGTAGCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGAGCTTCAAGGGTTGTGCTACTCGACGTTGTATGGAATCCATCCGTAGAACAACAGGCTATCAGCAGAGCCTATCGGATTGGACAGAAGAGGGTTGTGTACACTTACCATCTTCTCACTCAAGGGACTGCTGAATACGCAAAATATTGTAAACAGGCCCATAAGGACCGGTTATCTGAACTCGTATTTACAGCCAAAAATGCCGATAATGATGATGAGTCAAAGAGCTGCGCTGTGAACATTGAAGATAGAATTCTTGATCAAATGATGCGGCACGAAAAGCTCAAAGACATGTTTGTTAAGTGTGTGGTACAGCCGAAGGATCAAGATTTGGTCGATAGTTTCGCCTATTGA 741 0.413 VASVHPSLFLQCKLLEEEESVVDKDRLEKQWLNLYGGVKTKFLLEFVKLCDAYNEKVLVFSQFLDTLSLIEDQLNSVFKWTKGKEILYLDGNVDPNEKQSRIHSFNDASSQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVEQQAISRAYRIGQKRVVYTYHLLTQGTAEYAKYCKQAHKDRLSELVFTAKNADNDDESKSCAVNIEDRILDQMMRHEKLKDMFVKCVVQPKDQDLVDSFAY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22243g00001 246 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 42 198 IPR001650 -
Trme22243g00001 246 Pfam Helicase conserved C-terminal domain 46 157 IPR001650 -
Trme22243g00001 246 Gene3D - 2 242 IPR027417 -
Trme22243g00001 246 SMART helicmild6 68 157 IPR001650 -
Trme22243g00001 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 226 IPR027417 -
Trme22243g00001 246 CDD SF2_C_SNF 39 168 - -
Trme22243g00001 246 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 239 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22243g00001 Trme-Chr22243 574 1314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22243g00001 54 187 RAD5 or RAD16-like Gene Family AT5G43530 38.060 4.26e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22243g00001 K10875 - lja:Lj0g3v0068189.1 327.02