Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2223g00001 ATGTCGTCGTCGATTCAGCCTGACGAAAGTGAAATCGAGAAGGTTCATGGCAAACGCTCCAAGTTCGGCGAGGTAGAAAGCCAATGCCAACCATATAATCCATTCTGGGATGATGAAGAAGAGTATGATTATTCCAAGGAGCCGGGATTCGTGATGCCTGACCTCTCTGTGAGGATCTTGTTTTTATATCCCTTCCTCCTGGATGGCAGTTACAATGGCGGTGCATATTCTGTGTGTGACCATCGATGTGATGGTCACCATGCTCCTCGGCGTGATGTTGATGAATCACTATCACTTATTCCGGGTATGGTTATACCTCCCTGTCTGTTTGATTTTGCGAAGGAGATGATTGCTAAGTCCGATGATAAAACCGTTCTGGCAACCTACCTCTCTGATGAATTAGAGGAGGACTCTCATTTGCTTCAGCTTTTCAAGTCTAAGGTTGATGTGAAAAGGGCCAAGCTTGCTATTGATCAAGAAACTGGATTTAGTGGGAATTTTGGCTTTGTTACCTTTGCCACCAAGGAAGATGCTCAGAAGGCTATTGAAGAATTCGATGGGCATGTGCATGGCTGGGACAAAAGAACCATGGGAGTTGATTGGGCCACCCCAAGAACAGCCTAA 624 0.4583 MSSSIQPDESEIEKVHGKRSKFGEVESQCQPYNPFWDDEEEYDYSKEPGFVMPDLSVRILFLYPFLLDGSYNGGAYSVCDHRCDGHHAPRRDVDESLSLIPGMVIPPCLFDFAKEMIAKSDDKTVLATYLSDELEEDSHLLQLFKSKVDVKRAKLAIDQETGFSGNFGFVTFATKEDAQKAIEEFDGHVHGWDKRTMGVDWATPRTA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2223g00001 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 204 IPR000504 GO:0003723
Trme2223g00001 207 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 138 206 - -
Trme2223g00001 207 SMART rrm1_1 124 200 IPR000504 GO:0003723
Trme2223g00001 207 SUPERFAMILY RNA-binding domain, RBD 121 205 IPR035979 GO:0003676
Trme2223g00001 207 Gene3D - 113 207 IPR012677 -
Trme2223g00001 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2223g00001 Trme-Chr2223 1320 2325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2223g00001 96 205 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 1.02e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2223g00001 K03248 - tpra:123898674 160.999