Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme222075g00001 ATGCCTGACCCACATCTCACGTGTTTGAAGTTAGGGAAGAGGCATTATTTTGAGGATGTGAATGGTGGNNNTNNNNNNNNNNTNNNNNNNNNNGGAGATAAGAGAGGGAAAGGGTATTGTGGTGGTGGTGGGAAGGTGGCTGCTGCGGCGGCGAGTTTTGCGGTGGCGAGGTGTCAGGTGGATGGATGCCACGTGGCATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCGAAGGCACCAAAAGTTGTGGTTTTGGGTTTAGAGCAGAGATTCTGCCAGCAGTGTAGCAG 311 0.463 MPDPHLTCLKLGKRHYFEDVNGGXXXXXXXXGDKRGKGYCGGGGKVAAAAASFAVARCQVDGCHVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme222075g00001 103 Pfam SBP domain 58 103 IPR004333 GO:0003677
Trme222075g00001 103 ProSiteProfiles Zinc finger SBP-type profile. 55 103 IPR004333 GO:0003677
Trme222075g00001 103 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 103 IPR044817 GO:0003677
Trme222075g00001 103 SUPERFAMILY SBT domain 56 103 IPR036893 GO:0003677|GO:0005634
Trme222075g00001 103 Gene3D - 54 103 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme222075g00001 Trme-Chr222075 56 366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme222075g00001 8 103 SBP-box Gene Family AT1G27370 47.917 1.35e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme222075g00001 SBP 7.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme222075g00001 - - vvo:131621975 139.043