Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22201g00001 ATGACCGTTGCCGCAGGCACAATTGACCGAACTTTTGGTAGTTTGATACTTGGAAACGGCGAAACTATTGTTGGTTGGACTTTGTATCCTATTACTAATGCTATAGTTCATAATCTTCCACTTGTTTACAACAAAACTTTATCATCATGCAATTCATTTAGTCTTTTAAGTGAAGCTGCAACAANNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCAAATCAACAATGTTACTTCAGCAAGTGTAGTTGGTGCTGTTTTTATCTCAGAAAATCCAATACTGATTGACCTAGGAAGAGTTTTTTCTCCAAGTATTGTGATTAATCCAAAAGACAAAAAAGCGCTTATTCGATATATAAAAAGTGTTGAATTTCCAATTGCTAGTATCAATTTTCAACAAACATTTGTTGGTATAAAGCCAGCACCAGCTGCAGCTCATTACAGTTCAAGAGGTCCTTCAAAAAGTTATCCAAGAATCTTAAAGCCTGATGTAATGGCACCTGGCTCGAATGTTTTAGCCGCTTATGTTCCGACTTTATCATCGGCTACAATAGGAAGAAATGTTTTTTTATCGAGTAATTACAATCTTCTTTCAGGTACATCAATGGCATGTCCTCATGCATCAGGCGTTGCGGCTTTGTTAAAAGCCGCAAAGCCTGATTGGAGTGCAGCTGCTATAAGATCAGCAATAGTTACCACAGCTAATCCATTGGATAATACGCAAAATCCGATTATGGATAATGGTAATCCATCTCAATTCGCTTCGCCTCTTGCTATGGGAGCCGGTGAGATTGATCCTAATAAAGCATTGGATCCTGGCTTAATATACGATGCTACACCGCAAGACTATGTTAATCTCCTTTGTGATTTTGGTTATACACATAATCAAATCTTGACGATTACAAGATCGAAAAAATATAATTGCGATAAACCTTCGCCCGATCTTAATTATCCTTCTTTTATAGCTTTTTATGGTAACAAAGCAAAGACAATGGTGCAAAAGTTTTCNAGGACTGTGACTAATGTTGGAGATGGTGCTGCTAGTTACAATGTGAAGGTGACAAAACCAAAGGGTTGTGTTGTAACTGTGTTACCTGAGAAGTTAACATTTAGTTACAAGAATGAGAAACAGAGTTACTCTGTTGTTGTAAA 1166 0.3559 MTVAAGTIDRTFGSLILGNGETIVGWTLYPITNAIVHNLPLVYNKTLSSCNSFSLLSEAATXXXXXXXXXXXXXXXXQINNVTSASVVGAVFISENPILIDLGRVFSPSIVINPKDKKALIRYIKSVEFPIASINFQQTFVGIKPAPAAAHYSSRGPSKSYPRILKPDVMAPGSNVLAAYVPTLSSATIGRNVFLSSNYNLLSGTSMACPHASGVAALLKAAKPDWSAAAIRSAIVTTANPLDNTQNPIMDNGNPSQFASPLAMGAGEIDPNKALDPGLIYDATPQDYVNLLCDFGYTHNQILTITRSKKYNCDKPSPDLNYPSFIAFYGNKAKTMVQKFSRTVTNVGDGAASYNVKVTKPKGCVVTVLPEKLTFSYKNEKQSYSVVV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22201g00001 388 SUPERFAMILY Subtilisin-like 2 279 IPR036852 GO:0004252|GO:0006508
Trme22201g00001 388 Pfam Subtilase family 145 246 IPR000209 GO:0006508|GO:0008236
Trme22201g00001 388 CDD PA_subtilisin_like 14 134 - -
Trme22201g00001 388 ProSitePatterns Serine proteases, subtilase family, serine active site. 204 214 IPR023828 -
Trme22201g00001 388 ProSiteProfiles Serine proteases, subtilase domain profile. 1 275 - -
Trme22201g00001 388 Pfam Fibronectin type-III domain 319 388 IPR041469 -
Trme22201g00001 388 Gene3D - 292 388 - -
Trme22201g00001 388 Gene3D - 9 141 - -
Trme22201g00001 388 Gene3D Peptidase S8/S53 domain 1 288 IPR036852 GO:0004252|GO:0006508
Trme22201g00001 388 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 386 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22201g00001 Trme-Chr22201 67 1232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22201g00001 2 388 Subtilisin-like Serine Gene Family AT3G14240 40.049 2.76e-76 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22201g00001 - - gmx:100806072 568.54