Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22156g00001 ATTGGGAAAGGGACTTATAGCAATGTGTACAAAGCAAAAGACCTTATTACCGGAAAGATAGTGGCGTTGAAGAAAGTTAGAATTGATAATATGGAGGCTGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAAGCTTGATCACCCCAATGTAATAAAGCTTGAGGGTTTGGTTACTTCAAGAATATCATCAAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATTGCTGGCATTGGTGTCAAATTCTCTGAGCCTCAGGTAAAATGTTACATGAAACAATTATTGTCTGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGCGATATCAAGGGCTCCAATCTACTTATTGACGACGAAGGAATACTTAAAATTGCAGATTTTGGACTTGCAACTTTCTATGATTCTAAGCAAAAGCATGCGATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCTCCTGAGCTTCTTCTTGGGGCTACATTCTATGGTGTTGGGATTGATCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTTCTTGGTGGAAAGCCAATCATGCCCGGAAGAACAGAGGTATAG 609 0.4187 IGKGTYSNVYKAKDLITGKIVALKKVRIDNMEAESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGIGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDEGILKIADFGLATFYDSKQKHAMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLGGKPIMPGRTEV 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22156g00001 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Trme22156g00001 202 FunFam Mitogen-activated protein kinase 76 202 - -
Trme22156g00001 202 Pfam Protein kinase domain 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22156g00001 202 FunFam probable serine/threonine-protein kinase At1g54610 1 77 - -
Trme22156g00001 202 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trme22156g00001 202 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22156g00001 202 Gene3D Transferase(Phosphotransferase) domain 1 78 202 - -
Trme22156g00001 202 SUPERFAMILY Protein kinase-like (PK-like) 1 201 IPR011009 -
Trme22156g00001 202 ProSitePatterns Protein kinases ATP-binding region signature. 1 24 IPR017441 GO:0005524
Trme22156g00001 202 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22156g00001 202 PANTHER CELL DIVISION PROTEIN KINASE 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22156g00001 Trme-Chr22156 273 1311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22156g00001 1 201 Core Cell Cycle Gene Families AT5G10270 57.870 6.09e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme22156g00001 Pkinase 3.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22156g00001 K08819 - gmx:100802680 373.629