Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22122g00001 ATGCTTTCTTCTTTTTGTCTTAAGAGGGAGAAGGTGGAGCAGCTTCTACTTGAGCCAACCATTAACCATGCAATTGTTTGCGATGACCTAAAAAAATTCTATCCAGGAAGAGATGGAAATCCAGGGAAATTTGCAGTGAGGGAGTTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACATCAGGTGCGGCATATGTTCAAGGCCTGGACATAAGAACTCATATGGATGCAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAAGGGTTCAGCCTTGACTCAA 420 0.4405 MLSSFCLKREKVEQLLLEPTINHAIVCDDLKKFYPGRDGNPGKFAVRELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIRTHMDAIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22122g00001 140 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 139 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trme22122g00001 140 Gene3D - 17 140 IPR027417 -
Trme22122g00001 140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 132 IPR027417 -
Trme22122g00001 140 Pfam ABC transporter 50 123 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22122g00001 Trme-Chr22122 219 1014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22122g00001 34 115 Calmodulin-binding Proteins AT2G36910 33.735 2.79e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22122g00001 - - tpra:123887097 261.536