Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22121g00001 GAGACAGAAAAGTTAAAGCATGTACTAGCTAAGAAAATTCAGAAACTTGAGGAGCGGTCTCAGTTGAAAGAAAATGGCAGTCTTCCTCTTGCAGAGCAAGAGAAAATAAGGATGAACATTATATCTAGACATGTAATTATTCCCACTCGTGAAAATGGTGTCTCGACATGTGAAGCAAGTTGGTTTAGATTTGAAAAGAAAATTGCATCTGGACCCTTCAGTGATTTGTATAAAGGTACATTATGTAATCAAGATGTAGCTATCAAAGTCCTTAAGCAAGAAAGTTTGAATGAAAATATACAAAGAGAGTTTTCTCAGGAAGTCTATATCCTAAGTAAAATTCATCACCGAAATGTTGTCAAATTTATTGGCGCTTGTACAAAACCCCCATACCTTTACCTTGTCACAGAATATTTGTCTGGTGGAAGCATTTACGACCTATTACATAAACGGAACACCGTCCTTACTCTTCCATCTTTGCTCAAAGTAGCCATCGATGTTTCTGAAGGAATGAAATATTTACATCAGAATGATATCATACATCGGGACCTCAAGTCAGCTAATCTTTTGATAGATAAGACTGGGTTCTTCACAGAGTTTAGGTATAGTTGA 612 0.3627 ETEKLKHVLAKKIQKLEERSQLKENGSLPLAEQEKIRMNIISRHVIIPTRENGVSTCEASWFRFEKKIASGPFSDLYKGTLCNQDVAIKVLKQESLNENIQREFSQEVYILSKIHHRNVVKFIGACTKPPYLYLVTEYLSGGSIYDLLHKRNTVLTLPSLLKVAIDVSEGMKYLHQNDIIHRDLKSANLLIDKTGFFTEFRYS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22121g00001 203 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 63 194 - -
Trme22121g00001 203 ProSiteProfiles Protein kinase domain profile. 62 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22121g00001 203 SUPERFAMILY Protein kinase-like (PK-like) 55 195 IPR011009 -
Trme22121g00001 203 FunFam Kinase suppressor of Ras 1 55 139 - -
Trme22121g00001 203 Gene3D Phosphorylase Kinase; domain 1 53 134 - -
Trme22121g00001 203 Pfam Protein tyrosine and serine/threonine kinase 63 195 IPR001245 GO:0004672|GO:0006468
Trme22121g00001 203 SMART serkin_6 62 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22121g00001 203 Gene3D Transferase(Phosphotransferase) domain 1 135 198 - -
Trme22121g00001 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22121g00001 Trme-Chr22121 157 1289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22121g00001 1 193 MAP Kinase Kinase Kinase AT4G38470 52.284 2.98e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme22121g00001 PK_Tyr_Ser-Thr 5.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22121g00001 - - gmx:100818047 271.552