Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22116g00001 ATGGTTTATCGAGGCTGCCTCCGTGATGGCAAGGANNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTCACAAAAACATTATTACACTCCTTGGTTTCTGCTTTGAGAATGGCAATCTTCTTCTGGTTTACGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATTCACGGGACTAAGAAGAACCCCGGCGAGTTCGGTTGGGCGCAGAGATATAAGGTTGCAACAGGTGTTGCTGAGGCTTTGGATTATCTGCATTGTAAAGATGATCAGCCTGTTATCCATCGAGATGTAAAATCATCAAATGTATTACTATCCGAAGATTTTGAACCTCAGCTTTCTGATTTTGGATTGGCTACGTGGGCGTCAACCACATCATCGTATATAACGTGCACAGATGTTGCTGGAACCTTTGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGTGATAAGATCGATGTCTATGCGTTCGGTGTCGTGCTACTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGCTGATTTTCCAAAAGGTCAACAGAATCTTGTTATGTGGGCAAGTCCGCTTCTAAATAGCGGAAAGGTATCAGAATTGTTAGATCCTAGTTTAGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTC 705 0.3773 MVYRGCLRDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKNIITLLGFCFENGNLLLVYDFLSRGSLEENIHGTKKNPGEFGWAQRYKVATGVAEALDYLHCKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLATWASTTSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISADFPKGQQNLVMWASPLLNSGKVSELLDPSLGDNYDHEEMERMV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22116g00001 235 Pfam Protein kinase domain 39 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22116g00001 235 PANTHER OS08G0249100 PROTEIN 2 235 IPR046958 -
Trme22116g00001 235 SMART serkin_6 2 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22116g00001 235 FunFam Putative receptor-like serine/threonine-protein kinase 63 235 - -
Trme22116g00001 235 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22116g00001 235 Gene3D Transferase(Phosphotransferase) domain 1 64 235 - -
Trme22116g00001 235 SUPERFAMILY Protein kinase-like (PK-like) 38 231 IPR011009 -
Trme22116g00001 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Trme22116g00001 235 Gene3D Phosphorylase Kinase; domain 1 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22116g00001 Trme-Chr22116 1 1087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22116g00001 40 235 Trihelix Transcription Factor Family AT1G68690 46.000 1.11e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme22116g00001 Pkinase 8.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22116g00001 - - gmx:100305405 357.451