Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2210g00001 ATTGAACAAAACCATCTCCCTTTGCGATTTAGTTCGTTCNACTTCTTTCTCTTCGTGATTCAACAGCTCGATGTTTCCGAGATGTTGGTTGTTGCTCAAATTCTATCGGGTTGCTCCACCGATAGCCGATTCTTCAAGTTGTTCGACTTGGTGCTCCTTGTGGAAGTGGAATTAAATCTAAGAGCTTATGATCGAGCTGTGATCAAGTTTCGTGGAGTTGTTGCAGATATAAATTTCAATGTTTGCGATTATGATGAAGATATAAAGCAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGATTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGAAGATGGGAAGCTCGTATGGGACAGTTTCTAGGGAAGAAGTATATTGTATATCATGGGCTTTTTGATGGCGAGCTAGATGCTGCAAGAGCTTATGATAAGGCTGCTATAAAATGCAACGGAAGAGAAGCAGTGACAAATTTTGAGGCCAGTACTTATGAAGGAGAGTTAATTTCTCAATGTGATAATGAAGATAGCAACCAGAATCTTGATCTGAACTTGGCTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCAACACAATGGAAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATGCCTGATGATAAGAGTGTTATGGTAAGGTTCAAAAAATGTTAA 714 0.4006 IEQNHLPLRFSSFXFFLFVIQQLDVSEMLVVAQILSGCSTDSRFFKLFDLVLLVEVELNLRAYDRAVIKFRGVVADINFNVCDYDEDIKQEEFVHILRRQSTDFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIVYHGLFDGELDAARAYDKAAIKCNGREAVTNFEASTYEGELISQCDNEDSNQNLDLNLAIAPPSNSDVQMMNMQHNGSGLQVQRSWDDMPDDKSVMVRFKKC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2210g00001 237 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 61 196 - -
Trme2210g00001 237 CDD AP2 109 170 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 Pfam AP2 domain 109 160 IPR001471 GO:0003700|GO:0006355
Trme2210g00001 237 SUPERFAMILY DNA-binding domain 109 169 IPR016177 GO:0003677
Trme2210g00001 237 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2210g00001 Trme-Chr2210 658 2662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2210g00001 68 209 AP2-EREBP Transcription Factor Family AT4G36920 64.430 7.18e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme2210g00001 AP2 7.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2210g00001 K09284 - gmx:100797238 272.322