Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2206g00001 ATGTCTGATTCAAAGACTAGACATGGTGATAACAAGAGGAAGAAAGGAACACCATGGACTGAAGAAGAACACAGGTTGTTTCTTGCTGGGCTTAAGGAATACAAGAAAGGAGATTGGAGAAGCATTTCAAGATACTTTGTTGTTACAAGAACACACACACAGGTAGCAAGTCATGCTCAGAAGAAGTACTTTAATCACCAGAAAGAAAAGAAGAATAAAGAGAGAGAAAAGATCAAGTATTCATGA 246 0.374 MSDSKTRHGDNKRKKGTPWTEEEHRLFLAGLKEYKKGDWRSISRYFVVTRTHTQVASHAQKKYFNHQKEKKNKEREKIKYS 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2206g00001 81 NCBIfam myb-like DNA-binding domain, SHAQKYF class 14 67 IPR006447 GO:0003677
Trme2206g00001 81 PANTHER TRANSCRIPTION FACTOR KUA1 7 78 - -
Trme2206g00001 81 FunFam transcription factor MYB1R1 17 69 - -
Trme2206g00001 81 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 68 IPR017930 -
Trme2206g00001 81 Gene3D - 17 69 - -
Trme2206g00001 81 Coils Coil 56 81 - -
Trme2206g00001 81 SMART sant 15 65 IPR001005 -
Trme2206g00001 81 Pfam Myb-like DNA-binding domain 18 61 IPR001005 -
Trme2206g00001 81 MobiDBLite consensus disorder prediction 1 21 - -
Trme2206g00001 81 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trme2206g00001 81 SUPERFAMILY Homeodomain-like 12 67 IPR009057 -
Trme2206g00001 81 MobiDBLite consensus disorder prediction 67 81 - -
Trme2206g00001 81 CDD SANT 18 61 IPR001005 -
Trme2206g00001 81 MobiDBLite consensus disorder prediction 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2206g00001 Trme-Chr2206 979 1299 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme2206g00001 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2206g00001 - - csin:114261541 101.679