Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22064g00001 ATGGAGAACAATAAACCACCACACAAGGTCGAGAATTCTCCGACGTTGAAGTCTCCGGTCACCGATGANAATGGAGATGATAATGGTGTGAAAGTAGTTTGTCCAGCGCCACCGCAAGATGATAAAGTTACTGAAGTAGGTTCAAGGGTAAAGGAGGGAGAAGATGAGACTGTAGAATCAGCTGCGGCAAAAAAGAAGAGAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCGGCGGCAGCAGCAGCAGCGGCCGGAAGTGAAGCGGTTATTGAAACTGTAGAAGAGAAAGCTGAGACAAGTGAACCAAAGAAAATTGATTCGAAGACGAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAATTACTGGCTCGAAGAAAAGAGGCTGAAGAAAGAAAGAGAAAAGAAGAGGAAGAGAAACTAAGGAAAGAAGAAGAAGAGAGACAAAGGATAGAGGAACTTGAGAGACTGGAAGAAGAGGCTAAACGTATAAAGAAGGAAAAAGAAAAGCAAAAACTCTTGAAAAAGAAGAAAGAAGGTAAATTGTTAACTGATAAGCAGAAACAAGATCTTCGACGTTTGGAGGCAATGAGGAGGCAGATTCTCAATATGAATCTTCCTGTTGTGGAGGACACTGGTGCACCGGCTAAGAAACCCGTTTATCAGACAAGGACGGGGAGACCAACTAATCGAAATCATATTGGTGAAGCTTCTATCAAGACAGATGAAATTGGTGAGGCAAAGGAAACTATTACTGATTTAGATTCAAAGGAACCGGTGCAGATGGAGGACAAAGTTGAACTTCCTGAAGCTGTGGAGTCTGCTGTGCCTTCTAGTCCGAGTGATGGGAACCTCCGGTCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGAAAAACCAAGCTTCTGGATTGTATTCGAGGCACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTAAGAACATACGTGAAAGAACTAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCCGGTCTACTAGTTATTGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTT 1142 0.4396 MENNKPPHKVENSPTLKSPVTDXNGDDNGVKVVCPAPPQDDKVTEVGSRVKEGEDETVESAAAKKKRKKKEKEKEKKAAAAAAAAGSEAVIETVEEKAETSEPKKIDSKTNKKVPKHVREMQELLARRKEAEERKRKEEEEKLRKEEEERQRIEELERLEEEAKRIKKEKEKQKLLKKKKEGKLLTDKQKQDLRRLEAMRRQILNMNLPVVEDTGAPAKKPVYQTRTGRPTNRNHIGEASIKTDEIGEAKETITDLDSKEPVQMEDKVELPEAVESAVPSSPSDGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAKNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22064g00001 380 MobiDBLite consensus disorder prediction 92 152 - -
Trme22064g00001 380 MobiDBLite consensus disorder prediction 44 66 - -
Trme22064g00001 380 Coils Coil 114 179 - -
Trme22064g00001 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 380 IPR027417 -
Trme22064g00001 380 Gene3D - 282 380 IPR027417 -
Trme22064g00001 380 MobiDBLite consensus disorder prediction 8 22 - -
Trme22064g00001 380 Coils Coil 58 82 - -
Trme22064g00001 380 Pfam Elongation factor Tu GTP binding domain 291 380 IPR000795 GO:0003924|GO:0005525
Trme22064g00001 380 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 287 380 IPR000795 GO:0003924|GO:0005525
Trme22064g00001 380 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 57 380 IPR015760 -
Trme22064g00001 380 MobiDBLite consensus disorder prediction 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22064g00001 Trme-Chr22064 1 1142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22064g00001 279 380 Eukaryotic Initiation Factors Gene Family AT1G76810 88.462 7.54e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22064g00001 K03243 - gmx:100814640 201.06