Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2205g00001 ATGATGATGAGTATTTCAGCAGCTCCATCTACATGTCCTATGGACCTTAACTATGTTCTCAGAATCCATTGGAACTCTTCTGCTTGTCAAAATTTTGACTCAAAAAAAGAAGTAAACTCATCAAGCACRTGTTRCATATCACTTTTGTCACTTTTTGGAATAGGATTTGCACAACATCTTAAAGAAACTTCTCAATTCAATCTTCAAGACCTTCAAACTTCAATTTCATGCATGAATGATTTTCAATCAAAGCTTAATTCTTTATCACTTTCAAACAACCTTGTCAACTCTTACTTTGACCCTCATCAATTTGTTATCTCTCGTAACTTTTGTGCAGGTATTGAAACTGTTCATGATTGGAATGAAAAGTTGGGTCAGAATACAAATTTGAACACTGCTTGTAAACCAGATCTAACTGATCTTTCTCAGTGTGATGCGTGTTTAGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCAATTGATGGTAATTCTGAAAATTCATTGAATTGTTTCTTTCTTACAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTGTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGTTTAACAGGAGCTGGTGTTGCATTGTTTGTTATGTGTTCTTTGTTGGGTTTATATGTTTGGTTTGATAGAAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAACAAGGTTCTAGGCGTAGATTAAGGCCTAATACAGGTTCAATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAAAATTTCATAGGGAGAGGTGGATTTGGTTTGGTTTTTAAAGGAACTTTGGCTGATGGATCTGTTGTTGCTGTTAAGAGGGTTTTAGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTTGAGATTATTAGTAATCTTAAGCATAGGAATCTGTTGCCTCTTAGAGGTTGTTGTGTGGTTGATGATAATGAGAATTATGGTGATAAGGGAAGTCAAAGATATCTTGTTTATGATTATATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTCAAAAAGCAAACAAATCATTGACTTGGCCTCTTAGGAAAAACATTATTTTGGATGTGGCAAAGGGTTTGGCTTATTTGCACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCAACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGACTTGCTAAACAAAGTCGGGAGGGTCAGTCTCATCTCACTACTAGAGTTGCCGGAACTCATGGATATTTAGCGCCGGAATATGCGCTTTATGGTCAACTGACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGATTTGTCTTCATCGGGATCGCCGCGAGCATTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAGTCGGGGAAAATAGATGAGGCTTTGGATGCTTCTCTTTTGAAAGACGATAACAATGCTAGTGCAAATCCTAAGAGCATAATGGAAAGGTATTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTAAGGCCAACAATTTCTGATGCTTTGAAGATGATGGAAGGTGATATCGAGGTTCCTCAAATTCCAGATAGGCCGATGCCTCTTGGACATCCTTCGTTTTATAATAATGATAGCAACGGCAACACTTTTAGCATATCCCCGGCATTAAGCGGCCTCAAATTGCAAGCTGGAGACATGCTCAGGTAA 1890 0.3783 MMMSISAAPSTCPMDLNYVLRIHWNSSACQNFDSKKEVNSSSTCXISLLSLFGIGFAQHLKETSQFNLQDLQTSISCMNDFQSKLNSLSLSNNLVNSYFDPHQFVISRNFCAGIETVHDWNEKLGQNTNLNTACKPDLTDLSQCDACLAAGLQVKQKLVSIDGNSENSLNCFFLTILYAAGIVNEFGPESNGAVTCAFSVPVYSQVGSGSKGHQGLVFGLTGAGVALFVMCSLLGLYVWFDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDDNENYGDKGSQRYLVYDYMPNGNLEDHLFVSKDPQKANKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDEALDASLLKDDNNASANPKSIMERYLLVGILCSHVMVALRPTISDALKMMEGDIEVPQIPDRPMPLGHPSFYNNDSNGNTFSISPALSGLKLQAGDMLR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2205g00001 629 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 374 588 - -
Trme2205g00001 629 Gene3D Transferase(Phosphotransferase) domain 1 374 588 - -
Trme2205g00001 629 SMART serkin_6 289 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2205g00001 629 CDD STKc_IRAK 295 582 - -
Trme2205g00001 629 ProSiteProfiles Protein kinase domain profile. 289 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2205g00001 629 Gene3D Phosphorylase Kinase; domain 1 260 373 - -
Trme2205g00001 629 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 58 602 - -
Trme2205g00001 629 FunFam probable receptor-like protein kinase At1g11050 251 373 - -
Trme2205g00001 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Trme2205g00001 629 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Trme2205g00001 629 Pfam SPARK 7 172 IPR043891 -
Trme2205g00001 629 SUPERFAMILY Protein kinase-like (PK-like) 270 580 IPR011009 -
Trme2205g00001 629 Pfam Protein kinase domain 291 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2205g00001 Trme-Chr2205 833 2722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2205g00001 5 629 Receptor kinase-like Gene Family AT1G11050 63.636 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trme2205g00001 Pkinase 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2205g00001 - - gmx:100806560 1023.46