Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme220418g00001 TATGTTGCACCCGAATATGCTAATACTGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCCTACTAGAAGCGATCACCGGAAGGGACCCTGTAGACTATACACGTCCTGCCAACGAGGTTTCAAATAATTACAAATGCAGCCATTTTCTACTTTTATCTTTGTCTTCCATCGAAAGTGATGTTACCATGGTCTTTCATATAGCTGATAAGATTTTGATTATCGTCATGACAGGTGAATCTTGTTGA 258 0.3915 YVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVSNNYKCSHFLLLSLSSIESDVTMVFHIADKILIIVMTGESC 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme220418g00001 85 PANTHER OS01G0323000 PROTEIN 1 45 - -
Trme220418g00001 85 SUPERFAMILY Protein kinase-like (PK-like) 1 55 IPR011009 -
Trme220418g00001 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme220418g00001 85 Pfam Protein tyrosine and serine/threonine kinase 1 47 IPR001245 GO:0004672|GO:0006468
Trme220418g00001 85 Gene3D Transferase(Phosphotransferase) domain 1 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme220418g00001 Trme-Chr220418 116 373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme220418g00001 1 45 Trihelix Transcription Factor Family AT1G68690 62.222 2.08e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme220418g00001 PK_Tyr_Ser-Thr 4.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme220418g00001 - - dcr:108221287 91.2781