Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2201g00001 ATGGGGAACTGTTGGACTAGAAGTCTTCAATCCTCAGGCAATCATCCCAACTCCAATACTGCACGGGACACCAACAATCAATCAGATAATTTTCGGTTTTCTTCTGGCTTCAGCAACTTAAGATTGATAAGGAATGGCAATTCCACATCTCTTGGGCGCAGCAGCAACTCTGGAGGAAATAGCAGACTATTTAGTAGTAGTAACAATCACTCAACAGGCAATAATTCAAGTACATCCTTTTGGGGTTCTGAGAATAGCCAGACCGCTCGACTAAGAGATGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGTAGAACTGAAGGCAGCCACTAGAAATTTCCGTCCAGATACTGTGTTAGGAGAGGGTGGTTTTGGTAGAGTATACAAGGGTTTGTTTAAGGAGAGCGCAGCGTCAAAAAGAGGTGAGGGTTTGACTATTGCCATCAAGAAATTGAATTCTGACAGCAGGCAAGGAGTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCACCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGTGAGCTATTTCTGGTGTATGAGTTTTTGCACCGTGGCAGCTTGGATAATCACCTATTTGGAAGAGGTTCAACTGTTCAGCCACTTTCATGGGACAGAAGGCTGAAAGTTATGATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCCTTGGAGAAGAAAATTATATACAGAGATTTCAAGCCCTCAAATATACTACTTGACAAGGCATACACGGCCAAGTTGTCAGACTTTGGCTTGGCCAGATCTGTTCCTTCCGATGATCACACTCACGTATCAACACAGGTGGTGGGAACATGTGGCTATGCCGCCCCGGAGTACATTGCCACAGGTCATTTGTATGTAAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATACTCACCGGTAAGCGGATAGGCGAGATAATACGCCTTAGTAAGCCAAAGTCCTTGCAGGTTTGGCTCAAATCAAACCTATTAAATAGAGCAAAATCGAGAAGCAACATGGATGCAAAGTTGGGAGGCAAGTATCCACCCAACTTAGCTTCACAAGTAGCTCAACTCGCTCTCAAATGCATCCAAATAGAACCCAAAGTGAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAGTATTGAAGCAGCCAATGATAAACCA 1236 0.4369 MGNCWTRSLQSSGNHPNSNTARDTNNQSDNFRFSSGFSNLRLIRNGNSTSLGRSSNSGGNSRLFSSSNNHSTGNNSSTSFWGSENSQTARLRDEEFPYGQILDAANLKVFTLVELKAATRNFRPDTVLGEGGFGRVYKGLFKESAASKRGEGLTIAIKKLNSDSRQGVAEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSTVQPLSWDRRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTAKLSDFGLARSVPSDDHTHVSTQVVGTCGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRIGEIIRLSKPKSLQVWLKSNLLNRAKSRSNMDAKLGGKYPPNLASQVAQLALKCIQIEPKVRPSMKEVVETLESIEAANDKP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2201g00001 412 MobiDBLite consensus disorder prediction 48 83 - -
Trme2201g00001 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Trme2201g00001 412 ProSitePatterns Protein kinases ATP-binding region signature. 128 159 IPR017441 GO:0005524
Trme2201g00001 412 PANTHER OS01G0588500 PROTEIN-RELATED 67 406 - -
Trme2201g00001 412 Pfam Protein tyrosine and serine/threonine kinase 126 402 IPR001245 GO:0004672|GO:0006468
Trme2201g00001 412 SUPERFAMILY Protein kinase-like (PK-like) 101 402 IPR011009 -
Trme2201g00001 412 ProSiteProfiles Protein kinase domain profile. 122 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2201g00001 412 Gene3D Phosphorylase Kinase; domain 1 106 205 - -
Trme2201g00001 412 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 206 411 - -
Trme2201g00001 412 FunFam Serine/threonine-protein kinase BIK1 89 205 - -
Trme2201g00001 412 Gene3D Transferase(Phosphotransferase) domain 1 206 411 - -
Trme2201g00001 412 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2201g00001 Trme-Chr2201 1 2533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2201g00001 108 410 Glycoside Hydrolase AT3G07070 42.105 1.53e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme2201g00001 PK_Tyr_Ser-Thr 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2201g00001 - - gmx:100813304 601.668