Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22017g00001 ATGCTAAGAAAAAACACTCTCAACATTGAAGATTCAAATGGTCTTCCATTAATTCACTTACTCCTCACAACAGCTACTTCAGTCGATGAAAACAACTTCGATTCATCGCTCGAAAACCTAACCGATCTTTACCAAATTGTTTCATTAACCGGCGATTCAGTTCAACGAGTTGTGGCCTATTTCACCGATGGTTTAACCGCGAAACTCCTCACAAAAAAATCACCATTCTATGAAATGTTGATGGAAGAACCAACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTATAGAGTCTCACCGTATTATCAATTCGCTCATTTCACCGCGAATCAAGTTATCTTAGAAGCTTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCGATCCACGTCATTGATTTCGATGTTTCATACGGTTTTCAATGGCCTTCTTTGATTCAATCTCTTTCGGAGAAAGCAACAAGCGGAAACAAGATCTCTCTCAGAATAACCGGATTCGGTAAGAATTTAAAASAACTTCAAGAAACTGAATCTAG 536 0.3787 MLRKNTLNIEDSNGLPLIHLLLTTATSVDENNFDSSLENLTDLYQIVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQVILEAFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNKISLRITGFGKNLKZLQETES 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22017g00001 178 ProSiteProfiles GRAS family profile. 8 178 IPR005202 -
Trme22017g00001 178 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 176 IPR005202 -
Trme22017g00001 178 Pfam GRAS domain family 17 176 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22017g00001 Trme-Chr22017 338 873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22017g00001 19 166 GRAS Transcription Factor Family AT1G21450 36.242 6.34e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme22017g00001 GRAS 4.6e-41 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22017g00001 - - gmx:100809458 307.375