Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21966g00001 ATGGAAAAGTTAAAGCCTGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCCGAATCTTTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCAAAATGCCAGACCAAAGTGTTGGCCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACCGAAGACATACCACCTGGCGATGAGAGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATCGAACTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACCGACACCTGGGAGGTCAGTGGTAAAACATAG 420 0.419 MEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLATNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDESWLCPGCDCKDDCIELVNDLLGTSLSLTDTWEVSGKT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21966g00001 139 SUPERFAMILY FYVE/PHD zinc finger 47 115 IPR011011 -
Trme21966g00001 139 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 2 134 - -
Trme21966g00001 139 ProSitePatterns Zinc finger PHD-type signature. 58 109 IPR019786 -
Trme21966g00001 139 FunFam Homeobox protein HAT3.1 38 118 - -
Trme21966g00001 139 SMART PHD_3 57 110 IPR001965 -
Trme21966g00001 139 Pfam PHD-finger 57 112 IPR019787 -
Trme21966g00001 139 ProSiteProfiles Zinc finger PHD-type profile. 55 112 IPR019787 -
Trme21966g00001 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 120 IPR013083 -
Trme21966g00001 139 CDD PHD_PRHA_like 57 109 IPR045876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21966g00001 Trme-Chr21966 342 935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21966g00001 1 134 Homeobox Transcription Factor Family AT3G19510 72.388 1.53e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme21966g00001 PHD 1.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21966g00001 - - mtr:25485369 272.707