Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2193g00001 CGTCCATCACTAGGAGGTCAGCAGTCTGTTGCAGATAGAGCCAAAGTTGCAATGCAAAATTATTTAGATCTTTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAGGCTATCATTTCTACAAGAGTATGGTCCAAAACTGAGAGAAGGATATGTAACGGTGAAACATTTGTCAAATGTTTTACTGGATTCAGATGTATGGGCAGTTTTGAAGCCTGGGTTTTTGGCCTTGCTGGAGGATCCCTTCAACAACAAGCCACTGGATATANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNACAATCCCTTGCGTTACACATTTAAGGTTACTGGCGGAAACAGGAGCATATGCTTGAGAACTATCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTACAGAGGGGTGGTGTTCTCCTCATCGCTTTGGTTCATTTGCTCCCGTAAGAGGTTTGACTGTAGATGGAAGCCAAGCCCAATGGTATGTAGATGGACAAGCTGCATTTGAAGCAATTGCTTCTTCAATTCAGGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACATGAGGCGGCCTTTTGATAGTTTTCCTACCTTTAG 713 0.3815 RPSLGGQQSVADRAKVAMQNYLDLFLGNLEIVNSREVCKFLEVSRLSFLQEYGPKLREGYVTVKHLSNVLLDSDVWAVLKPGFLALLEDPFNNKPLDIXXXXXXXXXXXXXXXXXXXXXXXXXXNPLRYTFKVTGGNRSICLRTISSAKVKTWVTAINEAGLRPTEGWCSPHRFGSFAPVRGLTVDGSQAQWYVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYMRRPFDSFPTF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2193g00001 237 SUPERFAMILY PH domain-like 56 164 - -
Trme2193g00001 237 SUPERFAMILY Phospholipase D/nuclease 160 231 - -
Trme2193g00001 237 Coils Coil 98 98 - -
Trme2193g00001 237 ProSiteProfiles PH domain profile. 54 162 IPR001849 -
Trme2193g00001 237 Coils Coil 125 125 - -
Trme2193g00001 237 PANTHER PHOSPHOLIPASE D 27 230 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2193g00001 Trme-Chr2193 1 2653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2193g00001 1 237 Phospholipase D Gene Family (Wang group) AT3G05630 56.031 1.93e-87 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2193g00001 K01115 - gmx:100796914 358.221