Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21935g00001 TCAAAGCATCAGATATTGGTTTATGAATACTTACCTGGTGGATCCCTGGCTGATCACCTCTATGGTACCAACAGCCTTAAAGCTCCCTTAAGCTGGATTCGAAGGTTGAAAATTGCTGTCGATGCAGCAAAAGGATTGGATTATTTGCATAATGGAAGCGAACCAAGAATCATACACCGCGATGTCAAGTGTAGTAACATTCTCTTGGACATGGATTTGAATGCCAAGGTTTGTGACTTTGGCCTCTCTAAGCAGGTAACCAAAGAAGATGCAACTCATGTCACAACTGTTGTCAAGGGAACTGCTGGTTATCTAGATCCAGAGTATTACTCTACCCAACAACTTACTGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGATTCACTCTGGCACTCCTGATTCATTCAACTTGGTTTTATGGGCCAAACCCTATTTGCAGGCAGGTGCATTTGAAGTTGTGGATGAAAGCATACAAGGAACTTTTGATCTAGAGAGCATGAAGAAGGCGGCGTTCATTGCTGTGAAGTCGGTGGAAAGAGATGCATCACAGAGACCACCTATTTCTGAAGTATTAGCAGAGCTAAAGGAAGCTTATGGTATTCAGCTCAGGTTTCTTGAGTCATGTCAAAATGATAACTGA 675 0.4193 SKHQILVYEYLPGGSLADHLYGTNSLKAPLSWIRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDLNAKVCDFGLSKQVTKEDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHSGTPDSFNLVLWAKPYLQAGAFEVVDESIQGTFDLESMKKAAFIAVKSVERDASQRPPISEVLAELKEAYGIQLRFLESCQNDN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21935g00001 224 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 11 216 - -
Trme21935g00001 224 Gene3D Transferase(Phosphotransferase) domain 1 11 216 - -
Trme21935g00001 224 PANTHER OS01G0750732 PROTEIN 3 212 - -
Trme21935g00001 224 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21935g00001 224 Pfam Protein tyrosine and serine/threonine kinase 2 205 IPR001245 GO:0004672|GO:0006468
Trme21935g00001 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Trme21935g00001 224 SMART serkin_6 2 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21935g00001 224 SUPERFAMILY Protein kinase-like (PK-like) 3 206 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21935g00001 Trme-Chr21935 88 1319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21935g00001 2 217 Receptor kinase-like Gene Family AT5G48740 78.241 2.31e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme21935g00001 Pkinase 7.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21935g00001 - - aprc:113850446 409.838