Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme219255g00001 ATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCACGAAAGAAGAATCGGATCTGGCTAGGAACCTTCGCAACGCCGGAGATGGCTGCTCGAGCTCATGACGTGGCAGCTCTCGCCATCAAAGGTAAGTCAGCCATCCTCAACTTCCCTGAACTTGCTGATTCAATGCCCCGACCCGATTCAAACTCTCCTCGTGATGTTCAAGCCGCCGCTGTCAAAGCCGCTGCAATGGAAGTTCCCGATCAACAAACATCATCATCATCA 270 0.5333 MRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGKSAILNFPELADSMPRPDSNSPRDVQAAAVKAAAMEVPDQQTSSSS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme219255g00001 90 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Trme219255g00001 90 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Trme219255g00001 90 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Trme219255g00001 90 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Trme219255g00001 90 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 88 - -
Trme219255g00001 90 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Trme219255g00001 90 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Trme219255g00001 90 MobiDBLite consensus disorder prediction 57 90 - -
Trme219255g00001 90 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme219255g00001 Trme-Chr219255 1 270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme219255g00001 1 80 AP2-EREBP Transcription Factor Family AT5G11590 83.750 4.12e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme219255g00001 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme219255g00001 K09286 - gmx:100778201 156.377