Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme219251g00001 ATGAAGAAGGGACCATGGACCCCACAAGAAGATATGATTTTGATAGAGTACGTGAACAAGCATGGTGAAGGAAATTGGAATTCTGTTCAGAAGAATTCAGGATTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGATGGGCCAATCATCTAAGGCCCAACCTTAAGAAAGGTTCATTTTCTGAAGATGAAGAAAAAATCATCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTAGAATGGCTGCTCAG 252 0.4008 MKKGPWTPQEDMILIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEDEEKIIIELHAKLGNKWARMAAQ 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme219251g00001 84 Gene3D - 55 84 - -
Trme219251g00001 84 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Trme219251g00001 84 Pfam Myb-like DNA-binding domain 56 82 IPR001005 -
Trme219251g00001 84 SMART sant 2 52 IPR001005 -
Trme219251g00001 84 Gene3D - 2 54 - -
Trme219251g00001 84 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 84 IPR017930 -
Trme219251g00001 84 SUPERFAMILY Homeodomain-like 4 80 IPR009057 -
Trme219251g00001 84 ProSiteProfiles Myb-like domain profile. 51 84 IPR001005 -
Trme219251g00001 84 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Trme219251g00001 84 FunFam MYB-related transcription factor 2 55 - -
Trme219251g00001 84 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 84 - -
Trme219251g00001 84 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Trme219251g00001 84 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme219251g00001 Trme-Chr219251 97 348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme219251g00001 1 84 MYB Transcription Factor Family AT2G32460 86.905 1.10e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme219251g00001 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme219251g00001 K09422 - sind:105178495 164.081