Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21922g00001 ATGGATGAGAGATTGCTTGATGCTATATGCGAGAGACTGAAGCCATGTTTATTTACGGAGAATACTTACATTGTTAGGGAAGGAGATCCGGTTGATGAGATGCTTTTCATCATACGTGGTCGTCTCGAGAGTGTTACTACAGATGGTGGGAGRAGTGGCTTTTTTAATCGCAGTTTTCTAAAAGAGGCAGACTTCTGCGGGGAGGAGCTTYTAACCTGGGCGCTTGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTYAAGGCTTTAATGGAGGTTGAGGCTTTTGCGTTAACTGCTGAAGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAGCACACCTTCCGCTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTAGGTATTGCAAACGAAAAATTATGGAGCTTCGTCGAAAGGAAGAACCTGAGGACTCNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGGTGTACATCGCAATCGGGTTGTGAAGAGTTCCAGGGACTTGGTCAAACTACAGAAACCTTCTGAGCCCGACTTCACTGCTGATGATATGTAA 672 0.3973 MDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKIMELRRKEEPEDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVHRNRVVKSSRDLVKLQKPSEPDFTADDM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21922g00001 223 CDD CAP_ED 1 128 IPR000595 -
Trme21922g00001 223 ProSiteProfiles IQ motif profile. 133 162 IPR000048 GO:0005515
Trme21922g00001 223 Pfam Cyclic nucleotide-binding domain 18 108 IPR000595 -
Trme21922g00001 223 SMART cnmp_10 1 128 IPR000595 -
Trme21922g00001 223 Gene3D Jelly Rolls 1 115 IPR014710 -
Trme21922g00001 223 FunFam Cyclic nucleotide-gated ion channel 1 1 113 - -
Trme21922g00001 223 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
Trme21922g00001 223 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 218 - -
Trme21922g00001 223 ProSiteProfiles cAMP/cGMP binding motif profile. 1 81 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21922g00001 Trme-Chr21922 562 1233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21922g00001 1 222 Ion Channels AT4G30560 73.094 2.29e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21922g00001 K05391 - gmx:100820202 360.533