Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21919g00001 ATGATTTTGGATAAGAAAGAGATTGCAGAAACTCATTATGAGGTTCTCAATGTCAAGGAGGATGCAAATTATCAAGAAATTTGCGCTAGTTACCGAAGCACTGCACTCAGTTTACATCCTGATAAACTCTTGAACACATCTAGCAGTAATCAAACAAGTACAGAGAGATTTCTCAAAGTACACAAGGCATGGGAAGTTCTAAGTGATTCAAATGCTCGTTTGTTTTACGACAAGGAGCTGCAATGTTCAAGGCGGGAGGATTTATCCGCTTCCGAGGTTGCAGAAGATTTAAGACTACATGATATGATGACTGCTGAAGATGTCGGTGAAGAAGCATTGGAACTGTTTTATCAATGCCGATGCGGTGATTACTTCTCTGTGGACTCGTTGGAATTGCAGAAAATGGGATATACGTTGTTGAGAGATGAAAGCAGCGTGTCTATACGCAATGCTGATACTTTACCAGGATCGGTGATTCTTCCTTGTGGATCGTGTTCGTTGAAAGCTCTGCTCGTACTCAGTATGGACGATAGTTGA 537 0.4134 MILDKKEIAETHYEVLNVKEDANYQEICASYRSTALSLHPDKLLNTSSSNQTSTERFLKVHKAWEVLSDSNARLFYDKELQCSRREDLSASEVAEDLRLHDMMTAEDVGEEALELFYQCRCGDYFSVDSLELQKMGYTLLRDESSVSIRNADTLPGSVILPCGSCSLKALLVLSMDDS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21919g00001 178 PANTHER DPH3 HOMOLOG-RELATED 11 176 IPR044248 GO:0017183|GO:0046872
Trme21919g00001 178 SMART dnaj_3 10 72 IPR001623 -
Trme21919g00001 178 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Trme21919g00001 178 Gene3D DPH Zinc finger 86 178 IPR036671 -
Trme21919g00001 178 CDD DnaJ 11 69 IPR001623 -
Trme21919g00001 178 PRINTS DnaJ domain signature 31 46 IPR001623 -
Trme21919g00001 178 PRINTS DnaJ domain signature 52 72 IPR001623 -
Trme21919g00001 178 PRINTS DnaJ domain signature 13 31 IPR001623 -
Trme21919g00001 178 Pfam CSL zinc finger 108 169 IPR007872 -
Trme21919g00001 178 SUPERFAMILY Chaperone J-domain 10 80 IPR036869 -
Trme21919g00001 178 SUPERFAMILY CSL zinc finger 95 177 IPR036671 -
Trme21919g00001 178 Gene3D DnaJ domain 2 85 IPR036869 -
Trme21919g00001 178 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 93 174 IPR007872 -
Trme21919g00001 178 Pfam DnaJ domain 11 77 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21919g00001 Trme-Chr21919 690 1226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21919g00001 12 77 C2H2 Transcription Factor Family AT1G74250 43.284 3.10e-10 56.2