Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21891g00001 ATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCTCTTCCTGTTTTTATATACAAAGAGATTATTGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTTTATATACATGGTTGTTATCAAATTCATCTTGTCCTTTATGTAGAGGTACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCATGTTTTTGAGTTCGAGGATCAAAGAGATGAAGATTATGTTTTAGGTATTGGTTCTGTTAACAAAGATATGGAAAATAACATTATGAATGGAAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAAAAGCTCAAATAATGAAGGGGGTGTGGAAAGAAATGAAGATTTGCAAGTGGCTTTGAGAGGTTCTAAAGGTGATAATAGTATGAGACAATTGAAGGGAATTAGAGAAGTTTGTGATGGGAGTTTTTCTAATGATGGTGATGTTGAAGGCAAAAAAATCAACATTGCAAGGAAAG 535 0.3271 MSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIIGLKEPFDCAVCLYTWLLSNSSCPLCRGTLYSQGFSFDKNHVFEFEDQRDEDYVLGIGSVNKDMENNIMNGKRVFSVRLGKFKSSNNEGGVERNEDLQVALRGSKGDNSMRQLKGIREVCDGSFSNDGDVEGKKINIARK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21891g00001 178 SUPERFAMILY RING/U-box 47 71 - -
Trme21891g00001 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21891g00001 Trme-Chr21891 592 1276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21891g00001 6 175 C3H Transcription Factor Family AT2G18650 34.673 1.26e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21891g00001 - - tpra:123906744 333.569