Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21874g00001 ATGGATCCCACCAAAAAGCGCAAGCTTGACGAGAACGGTTTCGGTGGAGAAGCTGATCACCTAAAGCTCTCCCTGTCGGAAGCCCGCAAGGTCATCGAGCGGTTCACCCCTGACCAGCTAATCAACATCCTCCAAGACGCCGTCGTCCGCCATCCAGACGTTCTCTCTGCCGCTCGTGCAGTTGCAGACACTGACATCTCCCAACGCAAGCTCTTCATCCGCGGCCTTGGCTGGGACACCACTACTGAAGGTCTCCGCTCACTCTTTTCAACCTACGGTGAACTCGAAGAAGCCATCGTGATCCTCGACAAGGTCACCGGGAAGTCAAAGGGTTACGGCTTTGTCACCTTCCGCCACGTGGACGGAGCCCTACTCGCACTCCGTGAGCCTAGCAAACGCATCGACGGACGCGTAACTGTCACGCAGCTGGCCGCAGCAGGGAATTCAGGCTCCAACACCAATGCAGCTGACATTGCGCTCCGCAAAATATATGTGTCCAACGTGCCGCCGGATCTCGCAGGAGATAAGCTTCTAGCCCATTTCTCAATTTATGGAGAGATTGAGGAGGGCCCTTTGGGTTTTGATAAACAGACAGGAAGGTCGAAAGGGTTTGCTCTTTTTGTCTATAAGACTCCGGAGGGGGCACAGGCTGCACTATTGGAGCCCGTCAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGGGGAAACAGCAAGGGATGCGTGGTGGGCCGGACGGGGTTCAAGGTCGTGGGAATGCTCATGGAAACGGCATGGGGATGACTTCTGCACCTGGGCCTGGGGCGGGTCAATACGGTGGTTCTGTTGGTATTGGTTCCTATGGACGGTTTTCTGGTGGACACCAGGGTCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGTTGGTTTGTCTTCTGTGGGGAATCAGGCTCCGTCTTCAATGGGTGGTACCGGTGGATATGGTGGTGGTCATTATGGGGGTTATGGTGGGCCTGCTGCAACAGGTTTTGGCGGT 1041 0.5514 MDPTKKRKLDENGFGGEADHLKLSLSEARKVIERFTPDQLINILQDAVVRHPDVLSAARAVADTDISQRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGMRGGPDGVQGRGNAHGNGMGMTSAPGPGAGQYGGSVGIGSYGRFSGGHQGQPPMGNHPLNSSVGVGLSSVGNQAPSSMGGTGGYGGGHYGGYGGPAATGFGG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21874g00001 347 Gene3D - 45 152 IPR012677 -
Trme21874g00001 347 MobiDBLite consensus disorder prediction 299 313 - -
Trme21874g00001 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
Trme21874g00001 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Trme21874g00001 347 SMART rrm1_1 70 142 IPR000504 GO:0003723
Trme21874g00001 347 SMART rrm1_1 162 234 IPR000504 GO:0003723
Trme21874g00001 347 SUPERFAMILY RNA-binding domain, RBD 153 263 IPR035979 GO:0003676
Trme21874g00001 347 PANTHER GEO13361P1-RELATED 52 323 - -
Trme21874g00001 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Trme21874g00001 347 MobiDBLite consensus disorder prediction 255 313 - -
Trme21874g00001 347 Gene3D - 153 264 IPR012677 -
Trme21874g00001 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Trme21874g00001 347 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Trme21874g00001 347 SUPERFAMILY RNA-binding domain, RBD 61 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21874g00001 Trme-Chr21874 281 1321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21874g00001 157 246 C2H2 Transcription Factor Family AT2G19380 40.860 6.06e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21874g00001 K12741 - qsa:O6P43_001025 462.611