Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme218661g00001 ATGCTTGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGAGAAGACGGCCACATTATGCTCACTGATTTTGATCTGTCGTTGAGGTGTGCTGTTAGCCCAACACTTCTGAAGTCATCTTATGATGTTGACTCTACAAAAATTTCTCGTCTTAGTGCACAATCAAGTTGTATTGAACCATTCTGCATTGAACCATCTTGTCAAGTTACATGCTTCAGCCCCAGATTCCTACCGGCTTCAGCAAAAGCAAGGAAATTAAAAGTTGATCCTGTTGCCCAGGTCAG 293 0.4164 MLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSYDVDSTKISRLSAQSSCIEPFCIEPSCQVTCFSPRFLPASAKARKLKVDPVAQV 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme218661g00001 97 PANTHER FLIPPASE KINASE 1-RELATED 1 86 - -
Trme218661g00001 97 Gene3D Transferase(Phosphotransferase) domain 1 1 73 - -
Trme218661g00001 97 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Trme218661g00001 97 Pfam Protein kinase domain 3 36 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme218661g00001 97 SUPERFAMILY Protein kinase-like (PK-like) 2 36 IPR011009 -
Trme218661g00001 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme218661g00001 Trme-Chr218661 1 293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme218661g00001 1 88 AGC Kinase Gene Family AT2G36350 66.667 4.10e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme218661g00001 Pkinase 3.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme218661g00001 - K08286 psat:127125671 175.637