Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme218257g00001 ATGGAATGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCGAATGGATCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACTGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACCGAGCCTGTCATAGGTTACCGCAAGACCCTGGTTTTCTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAACTGGGTCATGCATGAATATCGCCTCAACGATGATCCTAGCCAAGGATCAGAG 264 0.4848 MEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTEPVIGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSE 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme218257g00001 88 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 80 - -
Trme218257g00001 88 SUPERFAMILY NAC domain 2 84 IPR036093 GO:0003677|GO:0006355
Trme218257g00001 88 ProSiteProfiles NAC domain profile. 1 88 IPR003441 GO:0003677|GO:0006355
Trme218257g00001 88 Pfam No apical meristem (NAM) protein 2 79 IPR003441 GO:0003677|GO:0006355
Trme218257g00001 88 Gene3D NAC domain 1 88 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme218257g00001 Trme-Chr218257 62 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme218257g00001 1 88 NAC Transcription Factor Family AT5G46590 71.910 4.82e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme218257g00001 NAM 8.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme218257g00001 - - qsa:O6P43_033983 157.532