Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme218102g00001 | GAGGTTGAGAGTTCCGATACAATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTAATTTTCGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTAGCTGATTATAATATCCAGAAGGAATCTACTCTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTGGAAAGCTCTGATACAATCGATAATGTGAAAGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATTTTTGCTGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGGCCT | 413 | 0.4455 | EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL | 138 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme218102g00001 | 138 | ProSiteProfiles | Ubiquitin domain profile. | 62 | 137 | IPR000626 | GO:0005515 | |
| Trme218102g00001 | 138 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 61 | IPR000626 | GO:0005515 | |
| Trme218102g00001 | 138 | SUPERFAMILY | Ubiquitin-like | 61 | 137 | IPR029071 | - | |
| Trme218102g00001 | 138 | SUPERFAMILY | Ubiquitin-like | 1 | 61 | IPR029071 | - | |
| Trme218102g00001 | 138 | ProSitePatterns | Ubiquitin domain signature. | 12 | 37 | IPR019954 | - | |
| Trme218102g00001 | 138 | PRINTS | Ubiquitin signature | 114 | 135 | IPR019956 | - | |
| Trme218102g00001 | 138 | PRINTS | Ubiquitin signature | 72 | 92 | IPR019956 | - | |
| Trme218102g00001 | 138 | PRINTS | Ubiquitin signature | 93 | 113 | IPR019956 | - | |
| Trme218102g00001 | 138 | FunFam | Ubiquitin-60S ribosomal protein | 1 | 62 | - | - | |
| Trme218102g00001 | 138 | SMART | ubq_7 | 62 | 133 | IPR000626 | GO:0005515 | |
| Trme218102g00001 | 138 | SMART | ubq_7 | 1 | 57 | IPR000626 | GO:0005515 | |
| Trme218102g00001 | 138 | ProSitePatterns | Ubiquitin domain signature. | 88 | 113 | IPR019954 | - | |
| Trme218102g00001 | 138 | PANTHER | UBIQUITIN | 62 | 137 | - | - | |
| Trme218102g00001 | 138 | Gene3D | - | 62 | 138 | - | - | |
| Trme218102g00001 | 138 | Gene3D | - | 1 | 61 | - | - | |
| Trme218102g00001 | 138 | CDD | Ubl_ubiquitin | 62 | 137 | - | - | |
| Trme218102g00001 | 138 | FunFam | Polyubiquitin 3 | 63 | 137 | - | - | |
| Trme218102g00001 | 138 | Pfam | Ubiquitin family | 64 | 135 | IPR000626 | GO:0005515 | |
| Trme218102g00001 | 138 | Pfam | Ubiquitin family | 1 | 59 | IPR000626 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme218102g00001 | Trme-Chr218102 | 1 | 413 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme218102g00001 | 1 | 62 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.387 | 1.87e-39 | 127 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme218102g00001 | K08770 | - | oeu:111379122 | 270.396 |