Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2179g00001 ATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCAGAAGTTAGGCTTCCTCCTTCTATTTCCAGGGACGAAAAAAAGAAGAGGGTTCATGAGCTCCTTGATAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGACGAGGGAAGGAGAGGAGTGTCGGGAGGTGAACGAAGAAGGGTATCTATCGGCATAGAGATCATTCATAAGCCATCACTTCTTTTTCTGGACGAACCTACCTCAGGACTTGATTCTACAAGTGCGTACAGTGTAGTGGAAAAGATTAAAGACATAGCTCAGGGTGGTAGCATTGTCCTCATGACCATACATCAGCCTTCATTTAGAATTCAAATGCTCCTCGACAAGATCACTGTCCTCGCAAGGGGAAGATTGATATACATGGGAAGGCCAGATGCACTTCACACTCACCTTTCCGGATTTGGAAGGCCTGTACCTGATGGAGAAAACAGTATTGAATATCTCCTAGATGTTATAACTGAATATGATCAAGCAACGGTTGGACTTGACCCTCTTGTTCAATACCAACACGATGGTCATAAACCTGACCCAGCAGCCATGACCCCAGTTCCAAAACCTCCAGGTACACCTTATAGAAGGAACACCCCAGCATCTAAACACATGATTAGCCTGCGCAGCCAAGGGTTTACTGCTGGTACACCACAGCCTGATTCTGCACAGTTTGGTCTTGATGATGAGGAAGACGATGATGAAAATTTTGATAACTCCCTTGAAAGGAGAAGTGTTAAAACAACAAGGAACATTGTAACCAGTGGTGTTTATCCACGTTTAGCTTCTCAGTTCTACCAAGATTTCTCAGCCAAAGATTTCTCTGTCTGGCTTTACAATGGTGTAGTAGGAACCCCACGTCGCCATCCATCATGGACTCCGGCAAGAACTCCAGCATGGACACCTGGGAAAACACCCTTGTCAGGACCAAGAAGTTTTATTTCCAACCAACATTCTGCATCTTATCAGGATCATTATTATCTCCAAAAATCTCATTCGGCGGTTAGCCAGTCTATGGATTACTCTGCAACTTCATATGCACCTTCGTATGAAGAGTTTGAGATTGAGGAAGTGCTCGATGAGCAGGACCTTGGACCTAAGTATGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACCGTACTCAATGTAATTCGCACTCCAGAACTCTTTGCCTCTCGTGAGATTGTGCTGACTGTTATGGCACTTGTCTTATCCACCATTTTCAATAACCTGGGTGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTCGCGGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATCAATGAAAGGTTCATCTTCATCAGGGAAACATCCCACAATGCTTACCGTGCTTCTTCATATGTAATATCTTCCCTCATTGTTTACCTCCCATTTTTTGCTGTTCAAGGCCTAACGTTTGCTGTCATAACCAAATTAATGCTCCACTTGAAAAGCGATCTCTTCAATTTCTGGATGATACTATTTTCCTCCCTCGTTACTACCAATGCATATGTGATGCTTGTTAGCGCACTTGTTCCTAGTTACATCACAGGCTATGCAGTAGTCATTGCCACAACAGCACTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAACGAACTCAGATACCCTTTTACTGGAAGTGGCTCCATTATATTTCTGCAATCAAATACCCATTTGAGGGATTGCTGATAAATGAATTCAAGAATGATCGGGGCTGCTACACAGGAAACAAAGCAGATTTATCACCGGGACCTTTAGGGGACGTGAAGCCTAGCAAACACCACAATGCCAGTCTGCCCCTTAACTGCTTATTAGGAGAAGACGTCTTGTCCACAATGGATATCACAATGGAAAGCCTATGGTATGACATCTTAATCCTGCTAGCTTGGGGTATTCTTTACAGGTTCTTCTTCTACCTGGTTTTGAGATTCTACTCCAAGAATGAAAGGAAATGA 2079 0.4324 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLDKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEKIKDIAQGGSIVLMTIHQPSFRIQMLLDKITVLARGRLIYMGRPDALHTHLSGFGRPVPDGENSIEYLLDVITEYDQATVGLDPLVQYQHDGHKPDPAAMTPVPKPPGTPYRRNTPASKHMISLRSQGFTAGTPQPDSAQFGLDDEEDDDENFDNSLERRSVKTTRNIVTSGVYPRLASQFYQDFSAKDFSVWLYNGVVGTPRRHPSWTPARTPAWTPGKTPLSGPRSFISNQHSASYQDHYYLQKSHSAVSQSMDYSATSYAPSYEEFEIEEVLDEQDLGPKYANPWLREVAVLSWRTVLNVIRTPELFASREIVLTVMALVLSTIFNNLGDTTFKDINRLLNFYIFAVCLVFFSSNDAVPSFINERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLMLHLKSDLFNFWMILFSSLVTTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPFYWKWLHYISAIKYPFEGLLINEFKNDRGCYTGNKADLSPGPLGDVKPSKHHNASLPLNCLLGEDVLSTMDITMESLWYDILILLAWGILYRFFFYLVLRFYSKNERK 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2179g00001 692 ProSitePatterns ABC transporters family signature. 70 84 IPR017871 GO:0005524|GO:0016887
Trme2179g00001 692 MobiDBLite consensus disorder prediction 238 268 - -
Trme2179g00001 692 MobiDBLite consensus disorder prediction 201 226 - -
Trme2179g00001 692 Gene3D - 2 164 IPR027417 -
Trme2179g00001 692 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 679 - -
Trme2179g00001 692 Pfam ABC-2 type transporter 402 608 IPR013525 GO:0016020|GO:0140359
Trme2179g00001 692 Pfam ABC transporter 5 98 IPR003439 GO:0005524
Trme2179g00001 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2179g00001 Trme-Chr2179 68 2701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2179g00001 19 171 Calmodulin-binding Proteins AT2G36910 25.490 3.54e-08 55.1