Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme217984g00001 GTGCCTCCTCTGGTGGAGCTTCTCAAGATACAAGATAACGGTATACGAGAATTGGCTACAGCCGCAGTCTTGACACTTTCATCTGCTGCAACCAACCAGCCGATTATTGCTTCTTCTGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAACCCTCCATAATCTCTCCACTGGCATTGAGAATTCCATTGAACTTCTTGACGCTAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGACTGTAAGAAGTACTCAAAGTTTGCAGAAAAAGCTACATCACTACTCGAAATCCTTTCCAACTCTGAAGAGGGACGAATCGCAATCTCGCTGGCAGACGGTGGAATTTTGACTCTAGTAGAGACAGTTGAAGACGGATCAC 415 0.453 VPPLVELLKIQDNGIRELATAAVLTLSSAATNQPIIASSGAAPLLVQILKSGSVQGKVDAVTTLHNLSTGIENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTLVETVEDGS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme217984g00001 138 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1 41 IPR000225 GO:0005515
Trme217984g00001 138 Gene3D - 1 138 IPR011989 -
Trme217984g00001 138 PANTHER U BOX DOMAIN-CONTAINING 1 135 - -
Trme217984g00001 138 Pfam Armadillo/beta-catenin-like repeat 34 68 IPR000225 GO:0005515
Trme217984g00001 138 SUPERFAMILY ARM repeat 1 135 IPR016024 -
Trme217984g00001 138 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 125 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme217984g00001 Trme-Chr217984 1 415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme217984g00001 1 138 U-box Gene Family AT3G54790 38.129 1.79e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme217984g00001 K08332 - gmx:100785760 226.868