Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme217828g00001 ATGGAGGATCCACCACCTGGTTTTCGTTTCTACCCAACAGAAGAAGAACTAGTTGGATTCTATCTACACAACCAGCTTGAAGGACAAATGCATCATCACATAAACAGAGTTATCCCTATCATTGATATCAATGCCAAAGAGCCATGGGATCTTCCAA 157 0.414 MEDPPPGFRFYPTEEELVGFYLHNQLEGQMHHHINRVIPIIDINAKEPWDLP 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme217828g00001 52 Pfam No apical meristem (NAM) protein 5 52 IPR003441 GO:0003677|GO:0006355
Trme217828g00001 52 ProSiteProfiles NAC domain profile. 4 52 IPR003441 GO:0003677|GO:0006355
Trme217828g00001 52 Gene3D NAC domain 13 52 IPR036093 GO:0003677|GO:0006355
Trme217828g00001 52 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 52 - -
Trme217828g00001 52 SUPERFAMILY NAC domain 3 52 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme217828g00001 Trme-Chr217828 232 388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme217828g00001 7 52 NAC Transcription Factor Family AT5G22380 63.043 2.07e-15 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme217828g00001 NAM 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme217828g00001 - - gmx:100780264 87.0409