Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21780g00001 ATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCAGAGCTAAGGGAAAGAGTCAGACGTTATGACCAATACAAGTGGCTGAACACCCGAGGGGTCGATGAAGAAAGCTTGGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCGATATGCGAGCGATTGAAACCGAGTTTATATACAGAGAAAACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATGTTGTTCATCATTCGTGGTCGTCTAGATAGTGTTACTACAGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAATTTTGAAGGAAGGTGATTTCTGTGGTGAGGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACAAGAACAGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTAAAGTTTGTTGCATCACAGTTTAGACACATACATAGCAGACAGGTTCAGCATACGTTCCGATTCTACTCGCAACAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGAAGTATTTAAGGAGAAAACGCAGAAAGGAGGAGGAAGAAGAATATTATGAATCTGATTATCCAGGAAGTGATGATCCTTCTAGGGCTTTGGTTCCGCGTGCTGAAAGTTCGTCAAAATTTGGATTTAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACATCGAGTTCCAAGTTCAAGCGACCTGATGAACATTCCAAAGCCCCCAGAACCTGACTTCAGTGCTCTTGATAATGAAGAGTGA 915 0.4328 MRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKYLRRKRRKEEEEEYYESDYPGSDDPSRALVPRAESSSKFGFNTTIYASRFAANLRGHRHRVPSSSDLMNIPKPPEPDFSALDNEE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21780g00001 304 ProSiteProfiles IQ motif profile. 206 235 IPR000048 GO:0005515
Trme21780g00001 304 FunFam Cyclic nucleotide-gated ion channel 1 1 61 - -
Trme21780g00001 304 CDD CAP_ED 70 201 IPR000595 -
Trme21780g00001 304 FunFam Cyclic nucleotide-gated ion channel 1 68 186 - -
Trme21780g00001 304 MobiDBLite consensus disorder prediction 279 304 - -
Trme21780g00001 304 SUPERFAMILY cAMP-binding domain-like 4 191 IPR018490 -
Trme21780g00001 304 SMART cnmp_10 70 201 IPR000595 -
Trme21780g00001 304 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 297 - -
Trme21780g00001 304 Pfam Cyclic nucleotide-binding domain 91 181 IPR000595 -
Trme21780g00001 304 ProSiteProfiles cAMP/cGMP binding motif profile. 70 200 IPR000595 -
Trme21780g00001 304 Gene3D Helix hairpin bin 1 61 - -
Trme21780g00001 304 Gene3D Jelly Rolls 68 188 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21780g00001 Trme-Chr21780 78 1077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21780g00001 1 304 Ion Channels AT1G19780 76.997 1.52e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21780g00001 K05391 - gmx:100810453 457.988