Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2175g00001 ATGACTGATTTGCTTGTAACCACCGTTAACAGGTTGACTTCTGAATCCTTTCGTAAATTTGGACGGATTTATGGTCTTATGAACGAGTTGGAAAAATTTAAGAATACTATTGAATCCATCAAAGCTGTGCTCCATGATGCCGAAGACAAGCAAGAACAAAAACGTGCTATACGAGATTGGATAAGAGAAATCAAATATGATGTGCTTCATCCTGTTGATGATTTGCTAGATGAATTTCTTATTGAGTATATGAGACACAAAATGGATGAATCTCATAAGAACAAAGCCACACAGAAAGTTACGAAGACGTTTAATCTAGCTCAAATTGATGTGGTGGTTGAACAAAATATCAGCGAAACTAGGGAAACTTGTTATTTTGTGTTGAAATCATCAGATATCATTGGAAGAGAAGATGATAAAAAGGAGACTATAAGCTTGTTGAAGCAACCCAATGGAGATCAACATGCCTCTGTGATTGCTATTGTTGGGATGAGTGGTATAGGAAAGACAACTCTTGCTCGGTTGGTATACGATGATGGTGAAGTAACAAAGTTTTTTGAAAAGAATATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAACTATTGTGAAGAACATGTTGAAGTCATTATTACCCAAAGAAAAAATTGATGATACATTATCATTGGACAACTTGCAAAATATGCTTCGTGACAATTTAACTGGTAAGAGATACTTGTTAGTTCTGGATGATGTTTGGAATGAGAGTTTTGAAAAATGGGCTCAATTGAGGACTTACTTGATGTGTGGTGCTCAAGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNACAATGGGTGTAAGTGACCCCTATGTTTTGAATGGTTTGACTCAAGAAGAATCATGGAATTTGTTAAAGAAGATTGCATTTATGGGTGATACCAATGGAGTGAATCGGTCTCTTGAACCAATTGGTAAGAAGATAGCAAAAAGGTGCAGTGGTGTTCCACTAGCAATCAGAACACTGGGAGGCCTATTGCAAAGTAAACGTGAAGAAAGCGAATGGATTGATGTTTTACAAGGTGACTTTTGGAAATCATGTGAAAACGAAGAAAGCATCATGCCAGTGTTGAAACGAAGTTACCAAAACTTGATGCCTCAACTGAGACAATGTTTTGCCTACTGCTCATTATATCCCAAGGATTGGGAAATTGAGAAGGACGAGTTGATTCAACTTTGGATGGCACAAGGTTATCTCGAATTTTCAGGTGAACACGGTTCTATGGAAGACATCGGCAACCAAATTGTGATGACTTTCTTGAAGAGGTCAATTTTTGAAGACGCAAAAATGGATGATGATGGTCGTGTTTATAGTTTCAAAATGCATTATTCAATGCATGATCTCGCAATGCACATGGCCGGCGGTGATTGTTGTTACTTGGATAGTGAGGCACTTGTAGAAAGTCCTGTGCATGTATCATTGAAACCCAATGCAATTTATTTGTTGCACTCATTAGATAGAAGCAGGCTACGGACTTTGATTTTTCTGTCTTCCGACGAGGAGGAAGAATTGAAAAGGGATGAATTGTTTGTTATTTCAAATTTCAAATACTTACGTGTCTTGAAGCTGTCATATTCATGTTTAAGCATGTTGTCTGAGTCAATTGGAAAATTGAAACATTTAAGATATCTTAACTTATCTCGCTGTACAGGATTGGGGAGGCTTTTCAAATCCATTAGCATTATTGTCTTGTTACAAACACTAATATTGATGCCAGATGAAAAAGTTGAATTTTCTACAATGGCTATCTCAAAATTAATCAATTTGAGACACCTTCAGATCTCTGATTGGGAAGCCTCTAAAGATAAGAATCCAGCTGGATTTGAAAAGTTGAGCATGCAGCTATACAAAGAGCCTCACTATTTGGTTTTGTGGAAAGTTAAAGGGATGGTGGAGGATGCCTAA 1959 0.3635 MTDLLVTTVNRLTSESFRKFGRIYGLMNELEKFKNTIESIKAVLHDAEDKQEQKRAIRDWIREIKYDVLHPVDDLLDEFLIEYMRHKMDESHKNKATQKVTKTFNLAQIDVVVEQNISETRETCYFVLKSSDIIGREDDKKETISLLKQPNGDQHASVIAIVGMSGIGKTTLARLVYDDGEVTKFFEKNMWVCVSDNFDVKTIVKNMLKSLLPKEKIDDTLSLDNLQNMLRDNLTGKRYLLVLDDVWNESFEKWAQLRTYLMCGAQGXXXXXXXXXXXXXXTMGVSDPYVLNGLTQEESWNLLKKIAFMGDTNGVNRSLEPIGKKIAKRCSGVPLAIRTLGGLLQSKREESEWIDVLQGDFWKSCENEESIMPVLKRSYQNLMPQLRQCFAYCSLYPKDWEIEKDELIQLWMAQGYLEFSGEHGSMEDIGNQIVMTFLKRSIFEDAKMDDDGRVYSFKMHYSMHDLAMHMAGGDCCYLDSEALVESPVHVSLKPNAIYLLHSLDRSRLRTLIFLSSDEEEELKRDELFVISNFKYLRVLKLSYSCLSMLSESIGKLKHLRYLNLSRCTGLGRLFKSISIIVLLQTLILMPDEKVEFSTMAISKLINLRHLQISDWEASKDKNPAGFEKLSMQLYKEPHYLVLWKVKGMVEDA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2175g00001 652 Pfam Rx N-terminal domain 9 93 IPR041118 -
Trme2175g00001 652 PANTHER DISEASE RESISTANCE PROTEIN RP 30 625 IPR044974 GO:0006952
Trme2175g00001 652 Gene3D Ribonuclease Inhibitor 499 640 IPR032675 -
Trme2175g00001 652 Gene3D - 114 264 IPR027417 -
Trme2175g00001 652 Gene3D - 293 378 IPR042197 -
Trme2175g00001 652 PRINTS Disease resistance protein signature 233 247 - -
Trme2175g00001 652 PRINTS Disease resistance protein signature 554 570 - -
Trme2175g00001 652 PRINTS Disease resistance protein signature 330 344 - -
Trme2175g00001 652 PRINTS Disease resistance protein signature 158 173 - -
Trme2175g00001 652 SUPERFAMILY L domain-like 526 625 - -
Trme2175g00001 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 393 IPR027417 -
Trme2175g00001 652 Gene3D - 5 111 - -
Trme2175g00001 652 Pfam NB-ARC domain 137 381 IPR002182 GO:0043531
Trme2175g00001 652 Gene3D - 379 471 IPR036388 -
Trme2175g00001 652 Coils Coil 30 50 - -
Trme2175g00001 652 FunFam Probable disease resistance protein At1g63360 379 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2175g00001 Trme-Chr2175 189 2663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2175g00001 159 434 WRKY Transcription Factor Family AT5G45050 24.172 3.47e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2175g00001 - - tpra:123883200 751.895