Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme217561g00001 CTGAAATCAGCTACTAGAAATTTCCGTCCTGAAAATGTGTTAGGAGAGGGTGGGTTTGGTACAGTATTCAAGGGTTTGATAAAGGAGGGAGCAAAATCAAAAAAAGGTGAGGTTTTGACTATTGCCATCAAGATATTGAATTCTCACAGTCTGCAAGGACTGGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTCGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGAAAGCTATTTCTCGT 263 0.4297 MKSATRNFRPENVLGEGGFGTVFKGLIKEGAKSKKGEVLTIAIKILNSHSLQGLAEWQSEVNFLGRLSHPNLVKLLGFGREDGKLFLV 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme217561g00001 88 ProSiteProfiles Protein kinase domain profile. 8 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme217561g00001 88 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Trme217561g00001 88 PANTHER OS01G0588500 PROTEIN-RELATED 1 88 - -
Trme217561g00001 88 SUPERFAMILY Protein kinase-like (PK-like) 3 88 IPR011009 -
Trme217561g00001 88 ProSitePatterns Protein kinases ATP-binding region signature. 14 44 IPR017441 GO:0005524
Trme217561g00001 88 Pfam Protein tyrosine and serine/threonine kinase 11 88 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme217561g00001 Trme-Chr217561 50 414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme217561g00001 1 88 Receptor kinase-like Gene Family AT1G53440 47.727 8.37e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme217561g00001 PK_Tyr_Ser-Thr 9.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme217561g00001 - - gmx:100813304 137.502