Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme217494g00001 AACGTTACTCCAACGTTGAGTAACAACAGCAACACCAACACCGTTAACGTTAACGGAGAAGCTGAAAACAGCACTGGCCGTGTCAGCAGCGGACAGAACACCGGAAGTGGCGGACGCCGTCCACGTGGACGTCCGCCTGGTTCAAAGAACAGGCCAAAACCGCCGGTGGTGATAACAAAAGAAACTCCGAACGCACTGCGTAGCCACATCTTGGAAGTCGCTGACGGAAACGACATCGTAGCGTGTATTTCCAACTTTGCGAATGTCCGTCACCGTGGAGTTTCGATTCACAGCGGTTCCGGCGCTGTTAGCAATGTCACTCTCCGGCAACCGTCTGGTCCTAACGGAATGCTTGTTCTTCCTGGGAGATATGAGCTTGTTTCACTCAGCGGTGCTTTTTTGCCTCCGCCGTCGCC 416 0.5385 NVTPTLSNNSNTNTVNVNGEAENSTGRVSSGQNTGSGGRRPRGRPPGSKNRPKPPVVITKETPNALRSHILEVADGNDIVACISNFANVRHRGVSIHSGSGAVSNVTLRQPSGPNGMLVLPGRYELVSLSGAFLPPPSP 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme217494g00001 139 MobiDBLite consensus disorder prediction 1 37 - -
Trme217494g00001 139 MobiDBLite consensus disorder prediction 1 58 - -
Trme217494g00001 139 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 137 - -
Trme217494g00001 139 Gene3D - 66 137 - -
Trme217494g00001 139 ProSiteProfiles PPC domain profile profile. 63 139 IPR005175 -
Trme217494g00001 139 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 135 IPR005175 -
Trme217494g00001 139 CDD DUF296 67 139 IPR005175 -
Trme217494g00001 139 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 139 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme217494g00001 Trme-Chr217494 1 416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme217494g00001 39 139 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.406 6.40e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme217494g00001 - - cam:101507777 185.267