Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21745g00001 TATATTAGTGTGAAGACTACTGCATTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAGTTAGTGGAAGAAGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATAGACAAGTTTGCCAAGTTTTATACTCCAGCTGTTGTAGTGATATCAACTCTTGTAGCAGTGGTTCCAATTGTGTTAAAAGTACATAATGAAAAATACTGGCTTCACTTTGCACTAGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTGTTCTTTCAACACCAGTTGCAACTTTTTGTGCTTATACCAAAGCAGCTACATCTGGTCTTCTAATCAAAGGGGGTGATTCTCTTGAAACACTGGCAAAAATTAAAATCATGGCTTTTGACAAAACTGGTACCATAACAAAGGGTGAATTTGTGGTCACAAATTTTCAATCTCTTTCAGATGACATTGATTTGAACGCATTAATTTACTGGGTGTCAAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGAAGCAATTGTTGACCATGGAAGGTCTCTCTCCATTGAACCAAATCCAGAAAAAGTGACGGAATTTGAAAATTTTCCTGGAGAAGGAATCTGTGGTAAAATTGATGACAAAGTTCTCTACATCGGAAACAAAAAAATTGCCGCAAGAGTAGGGTCTGAAACCGGTGAGAAAGCTCTTTCCTATGGTGACATTACCTGTTTGAGGCTATAA 714 0.3852 YISVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVVPIVLKVHNEKYWLHFALVVLVSACPCALVLSTPVATFCAYTKAATSGLLIKGGDSLETLAKIKIMAFDKTGTITKGEFVVTNFQSLSDDIDLNALIYWVSSIESKSSHPLAEAIVDHGRSLSIEPNPEKVTEFENFPGEGICGKIDDKVLYIGNKKIAARVGSETGEKALSYGDITCLRL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21745g00001 237 FunFam Putative cadmium/zinc-transporting ATPase 3 134 231 - -
Trme21745g00001 237 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 125 221 IPR023299 GO:0000166
Trme21745g00001 237 ProSitePatterns E1-E2 ATPases phosphorylation site. 125 131 IPR018303 -
Trme21745g00001 237 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 222 - -
Trme21745g00001 237 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 117 IPR023298 -
Trme21745g00001 237 Pfam haloacid dehalogenase-like hydrolase 119 218 - -
Trme21745g00001 237 Gene3D - 2 130 - -
Trme21745g00001 237 Pfam E1-E2 ATPase 2 101 - -
Trme21745g00001 237 Gene3D - 131 231 IPR023299 GO:0000166
Trme21745g00001 237 NCBIfam HAD-IC family P-type ATPase 13 157 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21745g00001 Trme-Chr21745 205 1298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21745g00001 1 219 Primary Pumps ATPases AT4G30110 73.516 4.45e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21745g00001 K01534 - gmx:100817567 390.578