Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme217181g00001 | ATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGATCGGATGTTTGATATGGGCTTTGAACCACAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACTGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATACAAGTTG | 253 | 0.4229 | MGIRCVPVYGGSGVAQQISELKRGTEIVVCTPDRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme217181g00001 | 84 | Gene3D | - | 1 | 35 | IPR027417 | - | |
| Trme217181g00001 | 84 | Pfam | DEAD/DEAH box helicase | 33 | 69 | IPR011545 | GO:0003676|GO:0005524 | |
| Trme217181g00001 | 84 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 82 | IPR014001 | - | |
| Trme217181g00001 | 84 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 83 | IPR027417 | - | |
| Trme217181g00001 | 84 | Gene3D | - | 36 | 84 | IPR027417 | - | |
| Trme217181g00001 | 84 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 33 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme217181g00001 | Trme-Chr217181 | 8 | 344 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme217181g00001 | 1 | 84 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.193 | 2.12e-08 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme217181g00001 | K12811 | - | cpap:110821566 | 154.451 |