LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme217054g00001	ATGGGTATTGAAAGAGGTGGACTTAAGAGTTTTCGTACCAGCAACTGGAGTGTGCCACCTAAGCTATGCGATTCTTGCAAACTTACTTCCGCCGCGCTTTTTTGCCGTTCAGATTCCGCTTTTCTATGCATCAACTGTGATTCCAGAATTCATTCCGCTAACAAGCTCTCTTCCCGCCACGACCGTGTCTGGATGTGTGAAGTGTGCGAGCAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCCGCTGCTCTTTGCGTCACGTGCGATTCTGATATCCACTCTGCAAATCCACTCGCTCGCCGCCACGAGCGTGTTCCTGTCGAACCTTTCTACGACTCCGCTGAATCTGTTGTGAAATCCTCCACCGCCGCTGCAGCTGCTGCCGCTTCCTTCAATTTCGT	404	0.5223	MGIERGGLKSFRTSNWSVPPKLCDSCKLTSAALFCRSDSAFLCINCDSRIHSANKLSSRHDRVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSTAAAAAAASFNFV	135

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme217054g00001	135	ProSiteProfiles	Zinc finger B-box type profile.	18	65	IPR000315	GO:0008270
	Trme217054g00001	135	ProSiteProfiles	Zinc finger B-box type profile.	61	108	IPR000315	GO:0008270
	Trme217054g00001	135	SMART	bboxneu5	66	108	IPR000315	GO:0008270
	Trme217054g00001	135	SMART	bboxneu5	18	65	IPR000315	GO:0008270
	Trme217054g00001	135	CDD	Bbox1_BBX-like	66	108	-	-
	Trme217054g00001	135	CDD	Bbox1_BBX-like	22	65	-	-
	Trme217054g00001	135	Pfam	B-box zinc finger	63	108	IPR000315	GO:0008270
	Trme217054g00001	135	Pfam	B-box zinc finger	20	62	IPR000315	GO:0008270
	Trme217054g00001	135	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	23	130	IPR045281	GO:0009909

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme217054g00001	Trme-Chr217054	14	417	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme217054g00001	21	135	C2C2-CO-like Transcription Factor Family	AT2G24790	69.565	3.08e-55	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	DBB	Trme217054g00001		zf-B_box	7.8e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme217054g00001	-		-	cam:101510742	217.238