Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme217013g00001 ATGGAAGCAAGTTGCTGCACCGATCCGAACCTACACAAAGGTTCTGTTGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAAGAGTTGGTCTGCGCTATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAATTAGTATATGTGGATTATGAGAGCGATGTTCTACTTGTTGGAGATGATCCTTGGGA 218 0.4266 MEASCCTDPNLHKGSVGRSIDVTTFKNYEELVCAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPW 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme217013g00001 72 ProSiteProfiles PB1 domain profile. 4 72 IPR000270 GO:0005515
Trme217013g00001 72 SUPERFAMILY CAD & PB1 domains 18 72 - -
Trme217013g00001 72 Gene3D - 4 72 - -
Trme217013g00001 72 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 72 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme217013g00001 72 Pfam AUX/IAA family 16 72 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme217013g00001 Trme-Chr217013 20 366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme217013g00001 14 72 B3 DNA Binding Superfamily AT1G19850 83.051 1.06e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme217013g00001 K14486 - gmx:100813003 122.864