Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme216805g00001 AGAAACCTGAAGCACAAAATAGAGGAGAAGCCAGAGCCAATATTTGAGAAGGAACCAAATGTAATACCACCATCTTCTCAGTCTGATGTTGAGGATATAGTTACTCGAAGGCTTGACATTTGCACCAAGTCCACTTCCAAACCATTGGAGATTGGTGAACATTCAAGTTCATCTCAGAATGCTACGGGTGAACTTTCATCCCAAAACACTACAGGTGAACCTTCATATAAGAACGCTACTGATGATATTATATCTCGGAATGCTACTGATGAACCTTTACCTGAGCAAGAAGTGAGGGAATTCCCTTGTCATTATTGTGACAAGAAATTCTCCTCTCCTCAAGCATTTGGAGGTCACCAAAACGCTCATAAACGTGAAC 379 0.4116 RNLKHKIEEKPEPIFEKEPNVIPPSSQSDVEDIVTRRLDICTKSTSKPLEIGEHSSSSQNATGELSSQNTTGEPSYKNATDDIISRNATDEPLPEQEVREFPCHYCDKKFSSPQAFGGHQNAHKRE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme216805g00001 126 SUPERFAMILY beta-beta-alpha zinc fingers 99 126 IPR036236 -
Trme216805g00001 126 MobiDBLite consensus disorder prediction 1 16 - -
Trme216805g00001 126 MobiDBLite consensus disorder prediction 1 96 - -
Trme216805g00001 126 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Trme216805g00001 126 MobiDBLite consensus disorder prediction 48 85 - -
Trme216805g00001 126 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 57 126 IPR044246 GO:0009788
Trme216805g00001 126 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme216805g00001 Trme-Chr216805 37 415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme216805g00001 99 126 C2H2 Transcription Factor Family AT1G80730 71.429 2.49e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme216805g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme216805g00001 - - tpra:123892015 159.458