Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21668g00001 ATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATYGTTGGGCTTACTGTAGCTGCAGCTGTTCTTGTAGTCCTCTTGGGAAGATACTTTTCTGGCAATACGAAAGATTTAGATGGAAAAGTTCAATTTGTTGCTGGAGAGACTAGTATCAGCGATGCTGTAGATGCGAGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTGGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTACGAAGGTTGTCAGCTTGCGAAACCATGGGCTCTGCTACGACAATTTGCAGCGATAAAACTGGAACTTTGACCTTAAACCAG 420 0.4357 MATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLVVLLGRYFSGNTKDLDGKVQFVAGETSISDAVDASIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21668g00001 140 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 123 IPR023298 -
Trme21668g00001 140 ProSitePatterns E1-E2 ATPases phosphorylation site. 131 137 IPR018303 -
Trme21668g00001 140 PANTHER CATION TRANSPORTING ATPASE 1 140 - -
Trme21668g00001 140 Gene3D - 1 140 - -
Trme21668g00001 140 NCBIfam HAD-IC family P-type ATPase 70 140 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme21668g00001 140 Pfam E1-E2 ATPase 3 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21668g00001 Trme-Chr21668 325 1264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21668g00001 1 140 Primary Pumps ATPases AT5G57110 80.714 2.91e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21668g00001 K01537 - vvo:131651368 226.098